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Add ToulligQC for raw read QC

enhancementNew feature or requestNew feature or request

Status: Open.

#285 In nf-core/nanoseq;

· Salome-Brunon opened on Nov 18, 2024

java.lang.OutOfMemoryError: Java heap space with FastQC

bugSomething isn't workingSomething isn't working

Status: Open.

#283 In nf-core/nanoseq;

· jlandry69 opened on Oct 30, 2024

Nanoseq Pipeline Fails at Bambu Process with java.lang.Boolean Error

Status: Open.

#279 In nf-core/nanoseq;

· xeniaroda opened on Oct 7, 2024

Different Chromosome counts between samtools and bambu

bugSomething isn't workingSomething isn't working

Status: Open.

#278 In nf-core/nanoseq;

· fbndr98 opened on Oct 1, 2024

FILTER 'STRANDBIAS' is not defined in the header

bugSomething isn't workingSomething isn't working

Status: Open.

#276 In nf-core/nanoseq;

· mazzalab opened on Sep 17, 2024

Failed to run medaka consensus

bugSomething isn't workingSomething isn't working

Status: Open.

#275 In nf-core/nanoseq;

· mazzalab opened on Sep 17, 2024

Command in stage minimap2_transcriptome failed with exit status = 127

bugSomething isn't workingSomething isn't working

Status: Open.

#271 In nf-core/nanoseq;

· rajithadp opened on Aug 30, 2024

ERROR ~ Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:INPUT_CHECK:SAMPLESHEET_CHECK (sequences_inputNB.csv)'

bugSomething isn't workingSomething isn't working

Status: Open.

#270 In nf-core/nanoseq;

· Jordthomas93 opened on Jul 23, 2024

SNIFFLES_SORT_VCF return an error due to mkdtemp

bugSomething isn't workingSomething isn't working

Status: Open.

#269 In nf-core/nanoseq;

· samuelecancellieri opened on May 28, 2024

Stringtie and featurecounts results: counts_gene.txt has more rows than counts_transcript.txt

bugSomething isn't workingSomething isn't working

Status: Open.

#265 In nf-core/nanoseq;

· CHENAO-QIAN opened on Apr 19, 2024

pipeline terminating early

bugSomething isn't workingSomething isn't working

Status: Open.

#264 In nf-core/nanoseq;

· nick-youngblut opened on Mar 13, 2024

Pulling biocontainers:v1.2.0_cv1 Singularity image fails

bugSomething isn't workingSomething isn't working

Status: Open.

#257 In nf-core/nanoseq;

· pcrxn opened on Oct 30, 2023