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Sunset private.nextflu.org

Status: Open.

#214 In nextstrain/seasonal-flu;

· joverlee521 opened on Feb 12, 2025

Address removal of <code>augur export v1</code> for private.nextflu.org builds

Status: Open.

#213 In nextstrain/seasonal-flu;

· joverlee521 opened on Feb 12, 2025

Tree rooting approaches

Status: Open.

#212 In nextstrain/seasonal-flu;

· jameshadfield opened on Feb 11, 2025

Allow users to define custom nucleotide coordinate offsets for clades for custom references

enhancementNew feature or requestNew feature or request

Status: Open.

#210 In nextstrain/seasonal-flu;

· huddlej opened on Feb 11, 2025

Allow users to run the workflow with Nextclade references for multiple segments

enhancementNew feature or requestNew feature or request

Status: Open.

#209 In nextstrain/seasonal-flu;

· huddlej opened on Feb 11, 2025

Add HA1 and NA mutation counts

enhancementNew feature or requestNew feature or request

Status: Open.

#201 In nextstrain/seasonal-flu;

· huddlej opened on Dec 19, 2024

Properly handle CSV-like TSVs

Status: Open.

#199 In nextstrain/seasonal-flu;

· joverlee521 opened on Dec 6, 2024

Update example GISAID workflow to support multiple input files

enhancementNew feature or requestNew feature or request

Status: Open.

#190 In nextstrain/seasonal-flu;

· huddlej opened on Oct 23, 2024

Update and standardize Nextclade datasets for all lineages and gene segments

enhancementNew feature or requestNew feature or request

Status: Open.

#186 In nextstrain/seasonal-flu;

· huddlej opened on Oct 15, 2024

Add GISAID isolate ID to acknowledgments download

enhancementNew feature or requestNew feature or request

Status: Open.

#178 In nextstrain/seasonal-flu;

· joverlee521 opened on Sep 5, 2024

Exclude sequences with unusual collection dates

enhancementNew feature or requestNew feature or request

Status: Open.

#175 In nextstrain/seasonal-flu;

· joverlee521 opened on Aug 6, 2024

Rename <code>master</code> to <code>main</code>

enhancementNew feature or requestNew feature or request

Status: Open.

#169 In nextstrain/seasonal-flu;

· genehack opened on Jun 11, 2024