Transforms and meta data to map between different mouse template brains. This package is intended to be used with navis and is analogous to navis-flybrains.

Currently mousebrains ships with:

• meta data and surface meshes the Allen CCF mouse brain template

You can install mousebrains from PyPI:

pip3 install mousebrains

To install the dev version from Github:

pip3 install git+https://github.com/navis-org/navis-mousebrains.git

In order to use CMTK-based transforms, you will need to have CMTK installed.

For the Elastix-based transforms, you will need to download elastix and make sure that the path to the binaries is in your PATH variable.

TODO

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When in doubt, feel free to open an issue to ask for advice.