Python3 extension for DAVID Bioinformatics Tool
! Current version supports only Chart Reports !
DAVIDpy is based on DAVID Web Service so it has the same restrictions (max. 200 jobs in a day).
You can install DAVIDpy from PyPI using pip:
pip3 install DAVIDpy
Also you should register HERE before using this tool.
Command-line tool
Easy and fast way to run DAVID analysis.You should use it if:
- You want just to save a result (.tsv or .csv).
- You need a fast way to have a look on result right in the command line.
To perform analysis, run:
davidpy -i <genes>
where <genes> is a genes list or a text file with genes.
Some optional arguments:
--tsv and --csv - save result at working directory.
--full - show more columns.
Python package
More flexible way to run DAVID analysis.It allows to work with results as a Pandas DataFrame object.
Common way to perform analysis:
import davidpy
client = davidpy.DAVID_start(input_list)
df = davidpy.get_chart(client)If you need, you can use client object to do more complex requests, using WSDL operations listed here. For example:
import davidpy
client = davidpy.DAVID_start(input_list)
client.service.getListReport()