GitHub repository for website
Tools-Microbiome-Analysis

You can cite this resource as:
Shetty, Sudarshan A., and Leo Lahti. Microbiome data science. Journal of biosciences 44, no. 5 (2019): 115.
Pre-print
Zendo:

We are working on an open source project developing R/Bioc methods, benchmarking data, and educational material for microbiome research based on the SummarizedExperiment class and its derivatives.
More information please check our website R/Bioc microbiome ecosystem with SummarizedExperiment

• The Academy of Finland (Grants 295741; 307127)
• The SIAM Gravitation Grant 024.002.002
• UNLOCK project of the Netherlands Organization for Scientific Research (NWO)
• University of Turku, Department of Mathematics and Statistics
• Molecular Ecology group, Laboratory of Microbiology, Wageningen University, The Netherlands
• Medische Microbiologie en Infectiepreventie, University Medical Center Groningen, The Netherlands