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35 Open 31 Closed
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Issues list

CODEX dataset with 200 images
#119 opened Nov 3, 2024 by andreevg04
4
spatial_interaction - issues with rare cell type handling
#117 opened Oct 29, 2024 by gesavoigt
Using SCIMAP with MERFISH or Visium data
#116 opened Sep 26, 2024 by poloarol
1
return_data not working for plots
#115 opened Sep 17, 2024 by LukasHats
1
spatial interaction z scores
#113 opened Aug 21, 2024 by YuanningEric
kernel keep dying
#112 opened Aug 9, 2024 by jianxinwang
3
Inquiry on Handling Imbalanced CODEX Data for Cellular Neighborhood Calculations in Scimap
#110 opened Aug 1, 2024 by Yuchen588
5
Gating QC plots no longer implemented in scimap.pp.rescale()
#105 opened Jun 6, 2024 by CameronFRWatson
spatial_lda reproducibility
#102 opened Apr 29, 2024 by batukav
Interpretibility of adata.uns['spatial_interaction']
#88 opened Jan 24, 2024 by Dillon214
1
batch samples analysis
#85 opened Dec 11, 2023 by yas92
3
Napari automatically downsamples image when using sm.pl.gate_finder()
#79 opened Oct 18, 2023 by MargotCh
3
How can I get the test p value of two groups when comparing the distances between two cell types
#75 opened Sep 14, 2023 by sailseem
1
not maching gating area with the image
#73 opened Sep 12, 2023 by Elena983
1
Can I gate .qptiff image?
#72 opened Sep 3, 2023 by xyin0918
1
spatial_lda and recurrent cellular neighborhoods
#71 opened Aug 30, 2023 by batukav
4
how to export the particular data file about the distance calculation
#70 opened Aug 13, 2023 by sailseem
1
mcmicro_to_scimap add a condition to error out if multiple dim CSV files are provided
#69 opened Aug 2, 2023 by pantsm
scimap installation got error
#64 opened Jun 19, 2023 by bugie19
11
umap plotting bug Something isn't working
#59 opened Jun 8, 2023 by ajitjohnson
Issues with ComBat feature:
#49 opened May 9, 2023 by hegewisch15
1
Visualization of a single category when plotting umap (sm.pl.umap)
#48 opened Apr 27, 2023 by tuuliavallius
Please provide a version cli flag to get package version
#46 opened Mar 29, 2023 by luiskuhn
2
supplying additional groupings
#41 opened Dec 7, 2022 by jamesMo84
2
voronoi diagram supply axis
#39 opened Nov 21, 2022 by jim-bo
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