ggChIPvis is designed to re-produce the Profile and Heatmap plots uisng ggplot2 package with more parameter controls and settings. ggChIPvis can accept the data from EnrichedHeatmap::normalizeToMatrix, ChIPseeker::getTagMatrix and deeptools' computeMatrix output data which allow you re-draw the plot in R session with other graphic modifications.

You can install the development version of ggChIPvis like so:

# install.packages("devtools")
devtools::install_github("junjunlab/ggChIPvis")

# or
remotes::install_github("junjunlab/ggChIPvis")

Jun Zhang (2023). ggChIPvis: Profile and Heatmap Visualization by Using ggplot2. https://github.com/junjunlab/ggChIPvis

• 2023/10/26 (Changing grid.xaxis2/grid.yaxis2/grid.colorkey into grobs.)
• 2023/10/24 (Adding ChipHeatmap and multiHeatmap for visualization based on grid systerm.)
• 2023/10/20 (Setting independent arg in if loop.)
• 2023/10/18 (Add group.split in retriveData and rowgroup.order in ChipVis.)

https://junjunlab.github.io/ggChIPvis-manual/

• ChIP-seq 可视化探索
• ggChIPvis 可视化基因组富集信号
• ChIP-seq 绘图设计
• ChIP-seq 绘图设计<<续>>