What's Changed

• OME-Zarr export: Fix export when source dataset is OME-Zarr v0.1 by @btbest in #2924
• Fix pytorch fbgemm.dll dependency issue by @btbest in #2927
• Multiscale: Preview scale file size in dropdown by @btbest in #2923
• Add logging widget to status bar by @k-dominik in #2928
• Support selecting/loading arbitrary URIs within an OME-Zarr store by @btbest in #2897
• Update ilastik with the new bioimageio v0.5 spec by @thodkatz in #2919
• Multicut: Fix deprecated append on pd.DataFrame by @k-dominik in #2934

Full Changelog: 1.4.1b22...1.4.1b23

What's Changed

• Removed unused SerialHdf5BlockSlot by @k-dominik in #2915
• Export to OME-Zarr by @btbest in #2907

Full Changelog: 1.4.1b21...1.4.1b22

What's Changed

• Skip requestLock test on CircleCI by @btbest in #2880
• Easier problem reporting by @btbest in #2879
• Add wait cursor when tiktorch server is started by @thodkatz in #2882
• H5N5 writing: Refactor test - readability, disentangle test cases by @btbest in #2896
• Autocontext: Connect raw data directly in 2nd (or later) rounds by @k-dominik in #2866
• Fix dark mode (for mac) by @k-dominik in #2898
• remove all things related to ipc by @k-dominik in #2900
• remove hbp-related project upload functionality by @k-dominik in #2901
• OME-Zarr in headless and API by @btbest in #2895
• Stop using mamba by @btbest in #2904
• Fix typo in carve/preprocessing by @j6k4m8 in #2908
• update pin for tiktorch by @k-dominik in #2910
• Fix flaky ObjectClassificationGui test by @k-dominik in #2911
• remove faulthandler activation on lazyflow import by @k-dominik in #2914

New Contributors

• @j6k4m8 made their first contribution in #2908

Full Changelog: 1.4.1b20...1.4.1b21

What's Changed

• Pixel Classification: Fix pop error by @btbest in #2889
• Add sphericaltexture_plugin to default object feature plugins by @oanegros in #2890 (preprint)
• Object classification: Restore default feature selection from previous verisons by @k-dominik in #2892

Full Changelog: 1.4.1b18...1.4.1b20

What's Changed

• Fix layerviewer update after shape change by @btbest in #2831
• Delay setupLayers to LayerGui being shown by @k-dominik in #2858
• Multi-GUI adapter/Feature selection: Stop throwing if no lanes exist by @btbest in #2837 / #2839
• Refactor applet serializer by @k-dominik in #2838
• Update open recent project list when saving as a project by @thodkatz in #2842
• Add note on 'bad features' warning for skewness and kurtosis by @k-dominik in #2847
• Update classifier serialization by @k-dominik in #2840
• Python 3.10 compatiblity fixes by @k-dominik in #2856
• Use pydantic for .ilp deserialization in experimental/api by @k-dominik in #2846
• Fix image links in api test projects by @k-dominik in #2859
• Add experimental autocontext api by @k-dominik in #2857
• Lazyflow logging and fix default operator naming by @btbest in #2850
• Minor Precomputed handling improvements by @btbest in #2832
• omg Zarr by @btbest in #2862
• Start QApplication with non-empty argv by @k-dominik in #2873
• Object classification plugins via entrypoints by @k-dominik in #2875

New Contributors

• @thodkatz made their first contribution in #2842 🎉🚀

Full Changelog: 1.4.1b15...1.4.1b18

Summary

• Future-proofing and backwards compatibility of the Precomputed implementation
• UX improvements in data selection and object classification
• Default export in compressed hdf5

What's Changed

• Object size filter: Increase permitted value range by @btbest in #2784
• fixed skimage.segmentation.slic signature change by @k-dominik in #2792
• Prettify dataset table by @btbest in #2793
• Labeling GUI: Copy colortable by @btbest in #2786
• remove OpBigTiffReader by @k-dominik in #2799
• better "debug" for error in command line usage by @k-dominik in #2763
• Reimplement urldatasetinfo as legacy by @btbest in #2805
• Use key-strings to identify multiscales by @btbest in #2801
• Change default export format to compressed hdf5 by @k-dominik in #2812
• Multiscale: Support project files containing an integer working_scale by @btbest in #2816
• Data Export: Update buttons after removing lane by @btbest in #2815
• Fixed OpMultiChannelSelector by @k-dominik in #2748
• Ensure all object features get exported to table by @k-dominik in #2814
• Data selection: Remove inline Add buttons immediately by @btbest in #2821
• Added note that data is copied to project file by @k-dominik in #2818
• Improve web loading gui by @btbest in #2820
• Multiscale: Save scale by @btbest in #2826
• ci: circumvent disk space limitation on D: by @k-dominik in #2817
• let pytest use pytest.ini to discover tests by @k-dominik in #2745
• Fix pytest8 by @btbest in #2808
• Tests: Deflake scale combobox in test on MacOS by @btbest in #2806
• Tests: Mock user interaction in ImageFileDialog by @btbest in #2819
• Tests: Fix mock table and assert combobox attempts to change by @btbest in #2804

Full Changelog: 1.4.1b13...1.4.1b15

Summary

• Simple multiscale support for remote datasets in Neuroglancer Precomputed format.

What's Changed

• lazyflow: use exception chaining in requests by @k-dominik in #2760
• Remove obsolete OpTransposeSlots by @btbest in #2762
• OpDataSelection: Default file exports to project file path by @btbest in #2774
• bump numpy 1.22 by @k-dominik in #2775
• try larger resource class for tests on circleci by @k-dominik in #2767
• Bump conda-incubator/setup-miniconda from 2 to 3 by @dependabot in #2780
• Multiscale v1 by @btbest in #2782

Full Changelog: 1.4.1b10...1.4.1b13

fixed incompatible xarray versions that led to failures in the Neural Network workflow.

Summary

• fix neural network workflow with updated zenodo api

What's Changed

• OpDataSelection: Directly obtain data-reader by @btbest in #2757
• Remove string concatenation when raising by @btbest in #2759
• bump tiktorch by @k-dominik in #2765
• exclude broken xarray version in conda pkg by @k-dominik in #2768

Full Changelog: 1.4.1b7...1.4.1b9

What's Changed

• fix test mouse move by @k-dominik in #2736
• make NN-related operators aware of tensor ids by @k-dominik in #2732
• replace vigra for tiff reading with tifffile by @k-dominik in #2733
• bigger shape in 'z' for tiffs means faster browsing by @k-dominik in #2737
• Fix devenv by @k-dominik in #2726
• Disabled addRemoveData test by @k-dominik in #2742
• Undo elf fix by @k-dominik in #2734
• Data input: Phrase axistags error message more user-friendly by @btbest in #2747
• First try most compatible H5 saving, otherwise use v1.8 by @oanegros in #2746
• reduce number of deprecation warnings by @k-dominik in #2740
• Request object features per plugin in parallel by @k-dominik in #2750
• experimental API refactor by @k-dominik in #2752

Experimental API changes

the generic ilastik.experimental.api.from_project_file function is now deprecated. Please use ilastik.experimental.api.PixelClassificationPipeline.from_ilp_file instead. New workflows will be made available only in the explicit fashion in the future.
Also the PixelClassificationPipeline.predict method was deprecated in favor of a more explicit PixelClassificationPipeline.get_probabilities method. Idea is to add get_OUTPUT methods to existing/new piplelines that match the headless export names.

New Contributors

• @oanegros made their first contribution in #2746

Full Changelog: 1.4.1b6...1.4.1b7