move the single cell QC and pseudobulk generation code to the analysi…

…s repo
greenelab · Sep 27, 2023 · 10a944d · 10a944d
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diff --git a/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_kang.ipynb b/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_kang.ipynb
diff --git a/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_liver.ipynb b/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_liver.ipynb
diff --git a/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_liver_DE.ipynb b/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_liver_DE.ipynb
diff --git a/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_liver_bulk.ipynb b/buddi/sc_preprocessing/0_qc_notebooks/scanpy_analysis_liver_bulk.ipynb
diff --git a/buddi/sc_preprocessing/2_make_pseudobulks/scanpy_sc_preprocess_allSplits-kang.ipynb b/buddi/sc_preprocessing/2_make_pseudobulks/scanpy_sc_preprocess_allSplits-kang.ipynb
diff --git a/buddi/sc_preprocessing/2_make_pseudobulks/scanpy_sc_preprocess_allSplits-liver.ipynb b/buddi/sc_preprocessing/2_make_pseudobulks/scanpy_sc_preprocess_allSplits-liver.ipynb
diff --git a/buddi/sc_preprocessing/2_make_pseudobulks/scanpy_sc_preprocess_monoSplits-kang.ipynb b/buddi/sc_preprocessing/2_make_pseudobulks/scanpy_sc_preprocess_monoSplits-kang.ipynb
diff --git a/buddi/sc_preprocessing/__init__.py b/buddi/sc_preprocessing/__init__.py