What's Changed

• Mesh annotation and misc bug fixes by @nrepina in #146
• Update registration and linking tasks by @nrepina in #147

Full Changelog: v0.8.12...v0.8.13

What's Changed

• Debug Z illumination correction task copying of folders by @nrepina in #144
• Add Build Label Image task by @nrepina in #145

Full Changelog: v0.8.11...v0.8.12

What's Changed

• Fix all tasks for Ngio breaking change and minor debug Z-illum (correct init_args) by @nrepina in #143
• Now all scmpx tasks should be compatible with reading in tables from new ngio table spec where label column is index of obs.

Full Changelog: v0.8.10...v0.8.11

What's Changed

• Mesh multiscale debug by @nrepina in #141
• Add lower bound for z illumination correction calculation. by @nrepina in #142

Full Changelog: v0.8.9...v0.8.10

What's Changed

• Debug z-illumination correction tasks by @nrepina in #139
• Update Mesh Multiscale task - remesh to target number of points by @nrepina in #140

Full Changelog: v0.8.8...v0.8.9

What's Changed

• Debug Linking tasks, add fill options for Expansion/Fusion tasks by @nrepina in #138

Full Changelog: v0.8.7...v0.8.8

What's Changed

• Add 3D to 2D MIP conversion task by @nrepina in #136
• Speed up relabeling task by parallelizing over chunks with dask @nrepina in #137

Full Changelog: v0.8.6...v0.8.7

What's Changed

Debug illumination correction and surface mesh tasks:

• Add init_args to compound tasks even if empty.
• Add init to illumination module.
• Catch ValueError when lmfit model generates NaN values
• Handle case where detected start and end of object are less than poly
• Add option to fill holes and filter by object volume in Surface Mesh
• Check for disconnected components before generating surface mesh

-> Debug by @nrepina in #135

Full Changelog: v0.8.5...v0.8.6

What's Changed

• Add lumen segmentation to Segment by Intensity Threshold Task by @nrepina in #134

Full Changelog: v0.8.4...v0.8.5

What's Changed

• Update Expansion and add Label Fusion tasks by @nrepina in #133

Full Changelog: v0.8.3...v0.8.4