This repository contains three branches with materials of the Paper "Self-organization and symmetry breaking in intestinal organoid development":
- Image Processing Pipeline for 2D/3D organoid segmentation - time course samples
- Image Processing Pipeline for 2D/3D organoid segmentation - time lapse samples
- Organoid linking algorithm
Further information are given in the README.md files of the corresponding branches.
If you decide to use materials from this repository in a published work, please kindly cite us using the following bibliography:
@Article{glaes, AUTHOR = {...}, TITLE = {Self-organization and symmetry breaking in intestinal organoid development}, JOURNAL = {Nature}, VOLUME = {...}, YEAR = {...}, NUMBER = {...}, ARTICLE NUMBER = {...}, URL = {...}, DOI = {...} }
MIT License
Copyright (c) 2019 Urs Mayr (FMI), Markus Rempfler (FMI), Dario Vischi (FMI)
You should have received a copy of the MIT License along with the source code. If not, see https://opensource.org/licenses/MIT