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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 641 370

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 306 78

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 304 79

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 252 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 145 89

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 114 21

Repositories

Showing 10 of 181 repositories
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 83 MIT 8 93 4 Updated Dec 3, 2024
  • nifty-ls Public

    A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!

    flatironinstitute/nifty-ls’s past year of commit activity
    Python 32 Apache-2.0 2 4 0 Updated Dec 2, 2024
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,329 0 13 Updated Dec 2, 2024
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 82 Apache-2.0 3 5 3 Updated Dec 2, 2024
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 42 Apache-2.0 9 7 1 Updated Dec 2, 2024
  • jenkins-webserver-template Public

    Template repo to serve as recipient of jenkins documentation build pushes

    flatironinstitute/jenkins-webserver-template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 2, 2024
  • the_well_web Public

    Tools for building a website featuring visualizations from polymathic/the_well

    flatironinstitute/the_well_web’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 2, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 46 Apache-2.0 6 55 1 Updated Dec 2, 2024
  • pytorch-finufft Public

    Pytorch wrappers for the FINUFFT library

    flatironinstitute/pytorch-finufft’s past year of commit activity
    Python 12 MIT 0 5 1 Updated Dec 2, 2024
  • aLENS_analysis Public

    Postprocessing & analysis scripts for aLENS data

    flatironinstitute/aLENS_analysis’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Dec 2, 2024
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