Fed-BioMed Build test #1470
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| name: Fed-BioMed Build test | |
| run-name: Fed-BioMed Build test | |
| on: | |
| pull_request: | |
| types: | |
| - opened | |
| - synchronize | |
| - reopened | |
| - closed | |
| - review_requested | |
| - ready_for_review | |
| branches: | |
| - master | |
| - develop | |
| - 'feature/479-bug-in-integration-test' # \todo To remove when merging. | |
| jobs: | |
| build-doc: | |
| name: Test documentation build | |
| runs-on: ubuntu-latest | |
| # if: ${{ github.event_name == 'push' || github.event.pull_request.opened == true }} | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - name: Checkout to repository | |
| uses: actions/checkout@v3 | |
| - name: Detect documentation changes | |
| uses: dorny/paths-filter@master | |
| id: filter | |
| with: | |
| filters: | | |
| docs: | |
| - 'fedbiomed/**' | |
| - 'scripts/docs/**' | |
| - 'docs/**' | |
| - 'envs/development/**' | |
| - 'envs/build/**' | |
| - 'mkdocs.yml' | |
| - 'README.md' | |
| - name: Setup python | |
| if: steps.filter.outputs.docs == 'true' | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Install Dependencies | |
| if: steps.filter.outputs.docs == 'true' | |
| run: pip install -r envs/build/docs-requirements.txt | |
| - name: Build documentation | |
| if: steps.filter.outputs.docs == 'true' | |
| # Version number for testing purposes should respect to standart which is vMajor.Minor.Patch | |
| run: scripts/docs/fedbiomed_doc.sh --build-dir build-repo --build-main --build-current-as v1.0.1 | |
| unit-test: | |
| name: unit tests | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-22-04, fedora38, macosx-m1] | |
| runs-on: ${{ matrix.os }} | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - name: Checkout to commit | |
| uses: actions/checkout@v3 | |
| - name: Filter module related changes | |
| uses: dorny/paths-filter@master | |
| id: filter | |
| with: | |
| filters: | | |
| module: | |
| - 'fedbiomed/**' | |
| - 'scripts/**' | |
| - 'tests/**' | |
| - 'envs/development/conda/**' | |
| - 'envs/build/**' | |
| - 'modules/**' | |
| - '.github/**' | |
| - name: Run unit tests | |
| id: unit-test | |
| uses: ./.github/actions/unit-tests | |
| if: steps.filter.outputs.module == 'true' | |
| with: | |
| test-dir: tests | |
| - name: Upload coverage reports to Codecov | |
| if: steps.filter.outputs.module == 'true' && matrix.os != 'macosx-m1' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| files: tests/coverage.xml | |
| flags: unittests-${{ matrix.os }} # optional | |
| name: codecov-umbrella # optional | |
| fail_ci_if_error: true # optional (default = false) | |
| verbose: true # optional (default = false) | |
| - name: Notify upload impossible on m1 | |
| if: steps.filter.outputs.module == 'true' && matrix.os == 'macosx-m1' | |
| run: | | |
| echo "No codecov-action available for macos-m1" # to check from time to time | |
| mnist-test: | |
| name: Test MNIST Notebook | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-22-04, fedora38, macosx-m1] | |
| runs-on: ${{ matrix.os }} | |
| needs: unit-test | |
| if: github.event.pull_request.draft == false | |
| steps: | |
| - name: Checkout to commit | |
| uses: actions/checkout@v3 | |
| - name: Filter module related changes | |
| uses: dorny/paths-filter@master | |
| id: filter | |
| with: | |
| filters: | | |
| module: | |
| - 'fedbiomed/**' | |
| - 'scripts/**' | |
| - 'envs/development/conda/**' | |
| - 'notebooks/**' | |
| - '.github/**' | |
| - name: Run MNIST Test - Master | |
| if: steps.filter.outputs.module == 'true' | |
| run: | | |
| source ~/.bashrc | |
| ./scripts/configure_conda node | |
| ./scripts/run_test_mnist ../../../.. | |
| shell: bash -l {0} | |