scphylo-tools is a comprehensive Python toolkit designed for single-cell tumor phylogenetic analysis. It integrates efficient implementations of state-of-the-art methods to infer evolutionary trees from single-cell genotype data.

• Phylogenetic Inference: Wrappers and implementations for state-of-the-art inference methods.
• API & CLI: Provides a Python API as well as command-line tools.
• Visualization: Built-in visualization tools.
• Datasets: Access to available datasets.
• Ease of Use: A unified Python interface for complex phylogenetic workflows.

Install the package via pip:

pip install scphylo-tools

Detailed documentation and tutorials are available at Read the Docs.