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Update conversion_image_type.py
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@SD3004
SD3004 authored Apr 25, 2022
1 parent 8682c30 commit cea9b59
Showing 1 changed file with 3 additions and 4 deletions.
7 changes: 3 additions & 4 deletions conversion_image_type.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,7 @@


#### Load gifti image using nibabel ####
#image = nb.load('/data/Data/data_release_gDL_benchmarking/Data/Regression/Native_Space/regression_native_space_features/sub-CC00051XX02_ses-7702_L.shape.gii')
image = nb.load('/home/sd20/data/dHCP/merged_metrics/ico6_template/original/CC01215XX11_146331_right_merged.shape.gii')
image = nb.load('/data/Data/data_release_gDL_benchmarking/Data/Regression/Native_Space/regression_native_space_features/sub-CC00051XX02_ses-7702_L.shape.gii')

#### Define number of channels in gifti ####
channels=4
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#### Swap axes so that img_array dim is 40962,4 ####
#img_array = np.swapaxes(img_array, 0,1)
img_array = np.swapaxes(img_array, 0,1)


#### Create .mha image using sitk ####
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#### Get array from image using sitk ####
img1_array = sitk.GetArrayFromImage(mha_img1)
img1_array = sitk.GetArrayFromImage(mha_img1)

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