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Commits on Jun 7, 2022

• Changed perturbation algorithm and distance along tree

  dannovikov

  committed
  76aa5ca

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Commits on Jun 3, 2022

• Added deviation measure

  dannovikov

  committed
  b50e947

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• w.i.p

  dannovikov

  committed
  4c590e4

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Commits on May 18, 2022

• added fn to compute average tree distance over all pairs of sequences

  dannovikov

  committed
  73a3595

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Commits on May 17, 2022

• adding util: distance along the tree

  dannovikov

  committed
  512bb00

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• code cleanup

  dannovikov

  committed
  6c04c9f

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Commits on May 12, 2022

• Refactored out seq utilies

  dannovikov

  committed
  f847803

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Commits on May 11, 2022

• Moved fasta cleaner to utils

  dannovikov

  committed
  224de10

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• Move tree_stability to top level directory

  dannovikov

  committed
  07d9d5d

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• Standardize RAxML output, refactor main loop, deepcopy of counts outside move, suppress edge lengths in pscore

  dannovikov

  committed
  bff4435

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Commits on May 7, 2022

• Tidying up.

  dannovikov

  committed
  a5c64d7

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Commits on May 6, 2022

• Started collecting parsimony scores

  dannovikov

  committed
  e9745de

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• Added results collection and cleaned up some code.

  dannovikov

  committed
  ce6d3ba

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Commits on May 5, 2022

• init commit

  dannovikov

  committed
  cb0b549

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