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sourmash_plugin_branchwater-feedstock Public
Forked from conda-forge/sourmash_plugin_branchwater-feedstockA conda-smithy repository for sourmash_plugin_branchwater.
Shell BSD 3-Clause "New" or "Revised" License UpdatedNov 11, 2024 -
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2024-debug-gather-difference Public
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assembly-exercise Public
Shotgun sequencing of text, in CGI script form
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2024-snakemake-delete Public
Odd behavior of `snakemake --delete-all-output`
Shell UpdatedSep 8, 2024 -
oxli-feedstock Public
Forked from conda-forge/oxli-feedstockA conda-smithy repository for oxli.
BSD 3-Clause "New" or "Revised" License UpdatedSep 2, 2024 -
minia Public
Forked from GATB/miniaMinia is a short-read assembler based on a de Bruijn graph
C++ GNU Affero General Public License v3.0 UpdatedSep 2, 2024 -
cuttlefish Public
Forked from COMBINE-lab/cuttlefishBuilding the compacted de Bruijn graph efficiently from references or reads.
C++ BSD 3-Clause "New" or "Revised" License UpdatedSep 2, 2024 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 31, 2024 -
stamps_2024_assembly_tutorial Public
Forked from MGNute/stamps_2024_assembly_tutorialTutorials for STAMPS 2024 related to metagenome QC, assembly and multiple genome alignment
UpdatedJul 22, 2024 -
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2024-sourmash-example-plots Public
Some example plots for sourmash
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2024-human-contam Public
Explore microbial contamination in human whole-genome shotgun data sets, using sourmash
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2024-human-sketch Public
Use sourmash to sketch the human genome (hg38), incl all unmapped chromosomes.
Python UpdatedMay 11, 2024 -
d-rug.github.io Public
Forked from d-rug/d-rug.github.ioDavis R Users' Group website
HTML Other UpdatedMay 11, 2024 -
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pp-sketchlib Public
Forked from bacpop/pp-sketchlibLibrary of sketching functions used by PopPUNK
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2024-sourmash-cds-coverage Public
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 14, 2024 -
pyodide Public
Forked from pyodide/pyodidePyodide is a Python distribution for the browser and Node.js based on WebAssembly
Python Mozilla Public License 2.0 UpdatedApr 10, 2024 -
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2024-assembly-tax-loss Public
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedFeb 27, 2024 -
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