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17 Open 25 Closed
17 Open 25 Closed
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Issues list

pip install deepcpg does not install tensorflow.
#43 opened Feb 8, 2023 by shawarden
pip install deepcpg => bad interpreter: /anaconda3/envs/deepcpg/bin/python: no such file or directory
#42 opened Nov 3, 2022 by shawarden
Negative strand index input
#41 opened Sep 19, 2022 by yxwucq
Recommendations for using in Tumor Normal scenario
#40 opened Jun 28, 2022 by harish0201
Can't calculate the pair potential
#39 opened May 31, 2021 by 1920993165
keras/tensorflow version incompatibility
#38 opened May 10, 2021 by sameelab
keras / tensorflow version compatibility
#37 opened Jun 30, 2020 by rekham1077
2
Fails CpG module training
#36 opened Apr 22, 2020 by yoramzarai
CpG sites in the negative strand
#33 opened Sep 30, 2019 by yasin-chop
3
Models in the zoo are not accessible
#30 opened Sep 25, 2019 by yasin-chop
impute CpG values for gene by cell matrix
#29 opened Sep 3, 2019 by shengyongniu
1
Unable to train joint model from pretrained cpg and dna model with tensorflow backend
#28 opened Aug 30, 2019 by snajder-r
1
GPU utility in training only about 25%
#27 opened Aug 6, 2019 by snajder-r
1
This software can only predict the methylation status not the exact methylation level right
#26 opened Jul 31, 2019 by sixone11
Can you provide pre-trained models from the DeepCpG model zoo
#25 opened Jan 31, 2019 by Chamemee
CpG profiles file not found
#24 opened Dec 19, 2018 by pegahmavaee
4
PCA of learnt motifs by DeepCpG
#23 opened Dec 11, 2018 by janewangsmile
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