Search results

Sprint 23

Status: Open.

#609 In bystrogenomics/bystro;

· cristinaetrv opened on Feb 5, 2025

Sprint 22

.task listA checklist of smaller tasksA checklist of smaller tasks

Status: Open.

#608 In bystrogenomics/bystro;

· cristinaetrv opened on Jan 10, 2025

 ·  

Sprint 22

Sprint 20/21

.task listA checklist of smaller tasksA checklist of smaller tasks

Status: Open.

#600 In bystrogenomics/bystro;

· cristinaetrv opened on Nov 11, 2024

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Sprint 21

Cleanup documentation

Status: Open.

#573 In bystrogenomics/bystro;

· akotlar opened on Sep 18, 2024

Rare Variant Analysis Paper Compendium

rare variant analysis

Status: Open.

#488 In bystrogenomics/bystro;

· akotlar opened on May 7, 2024

POE Deal with systematic bias in singular values under null model

Status: Open.

#460 In bystrogenomics/bystro;

· cristinaetrv opened on Apr 3, 2024

PyPI Bystro package

Status: Open.

#446 In bystrogenomics/bystro;

· cristinaetrv opened on Mar 21, 2024

[annotation] Add LOFTEE and REVEL

annotation

Status: Open.

#444 In bystrogenomics/bystro;

· akotlar opened on Mar 20, 2024

[rare variant] Add support for STAAR

rare variant analysis

Status: Open.

#443 In bystrogenomics/bystro;

· akotlar opened on Mar 20, 2024

[prs] Benchmark Langevin Dynamics PRS-CS against PRS-CS and SBayes-RC

prsPolygenic Risk Score methodsPolygenic Risk Score methods

Status: Open.

#424 In bystrogenomics/bystro;

· akotlar opened on Mar 8, 2024

[annotation] Stitch Together VCF Files - Second Step

Status: Open.

#423 In bystrogenomics/bystro;

· akotlar opened on Mar 8, 2024

[ancestry] Use assembly when choosing which model to use

ancestry

Status: Open.

#422 In bystrogenomics/bystro;

· akotlar opened on Mar 8, 2024

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Sprint 9

Send assembly version with ancestry job requests

ancestry

Status: Open.

#419 In bystrogenomics/bystro;

· akotlar opened on Mar 7, 2024

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Sprint 8

Determine standard in/outbound ports that we need on servers

Status: Open.

#412 In bystrogenomics/bystro;

· cristinaetrv opened on Feb 20, 2024

Create local Ancestry cli tool

ancestry

Status: Open.

#404 In bystrogenomics/bystro;

· akotlar opened on Feb 14, 2024

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Sprint 7

Consistent bystro config naming scheme

Status: Open.

#393 In bystrogenomics/bystro;

· wingolab opened on Feb 3, 2024

Add p-value thresholding with GWAS catalog inputs

prsPolygenic Risk Score methodsPolygenic Risk Score methods

Status: Open.

#371 In bystrogenomics/bystro;

· cristinaetrv opened on Jan 12, 2024

Add functionality for GWAS catalog as input

prsPolygenic Risk Score methodsPolygenic Risk Score methods

Status: Open.

#370 In bystrogenomics/bystro;

· cristinaetrv opened on Jan 12, 2024

Add specific ancestry connection to genetic maps

prsPolygenic Risk Score methodsPolygenic Risk Score methods

Status: Open.

#369 In bystrogenomics/bystro;

· cristinaetrv opened on Jan 12, 2024

Finish v1 of LD clumping procedure using genetic maps

prsPolygenic Risk Score methodsPolygenic Risk Score methods

Status: Open.

#368 In bystrogenomics/bystro;

· cristinaetrv opened on Jan 12, 2024

Investigate opensearch regression, not treating spaces as && within fields

search

Status: Open.

#349 In bystrogenomics/bystro;

· akotlar opened on Nov 13, 2023

 ·  

Sprint 4

[annotation] Decide on whether to output "intergenic" refSeq.siteType, or keep it as missing

annotation

Status: Open.

#330 In bystrogenomics/bystro;

· akotlar opened on Oct 26, 2023

[chore] Update annotation config to use snake case

Status: Open.

#328 In bystrogenomics/bystro;

· akotlar opened on Oct 24, 2023

IBD Genomics Consortium - Task List for v2

.task listA checklist of smaller tasksA checklist of smaller tasks

Status: Open.

#326 In bystrogenomics/bystro;

· akotlar opened on Oct 24, 2023

[infrastructure] Update startup.yml to reflect new Bystro Perl structure

infrastructure

Status: Open.

#316 In bystrogenomics/bystro;

· akotlar opened on Oct 23, 2023

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Sprint 3