Permission denied #82
Description
When I ran the test data, I met this problem,
command line:
nohup ./argoap_pipeline_stageone_version2.3 -i example/inputfqs -o testoutdir -m example/meta-data.txt -n 8
error:
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 4: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamondv0.9.24: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 5: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamondv0.9.24: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 6: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/bbmap/repair.sh: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 7: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/minimap2: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 8: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/extract_usearch_reads.pl: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 9: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/extract_usearch_reads.pl: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 12: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamond: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 13: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamond: Permission denied
cat: testoutdir/STAS.uscmg_1.dmd: No such file or directory
cat: testoutdir/STAS.uscmg_2.dmd: No such file or directory
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 18: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamondv0.9.24: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 19: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamondv0.9.24: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 20: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/bbmap/repair.sh: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 21: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/minimap2: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 22: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/extract_usearch_reads.pl: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 23: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/extract_usearch_reads.pl: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 26: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamond: Permission denied
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 27: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/diamond: Permission denied
cat: testoutdir/SWHAS104.uscmg_1.dmd: No such file or directory
cat: testoutdir/SWHAS104.uscmg_2.dmd: No such file or directory
testoutdir/ublastx_bash_Thu-Mar-9-15:49:48-2023.sh: line 30: /beegfs/home/syl/database_db/arg/Ublastx_stageone2.3/bin/merge_extracted_fa_update_metadate.v2.3.pl: Permission denied
diamond
/bin/bash: line 7: diamond: command not found
So how can I do to solve this?
yours tk,