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Update INSTALL.md
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mbnmbn00 authored Sep 4, 2019
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Expand Up @@ -20,7 +20,7 @@ These steps were tested and confirmed in freshly installed Ubuntu 18.04 LTS.
1. [Trinity](https://github.com/trinityrnaseq/trinityrnaseq) v2.6.6
1. [RepeatModeler](http://www.repeatmasker.org/RepeatModeler/) v1.0.11
1. [Maker](http://www.yandell-lab.org/software/maker.html) v2.31.10
1. [GeneMark-ES/ET](http://topaz.gatech.edu/GeneMark/license_download.cgi) v4.38
1. [GeneMark-ES/ET](http://topaz.gatech.edu/GeneMark/license_download.cgi) v4.46
1. [Augustus](https://github.com/Gaius-Augustus/Augustus) v3.3
1. [Braker](http://exon.gatech.edu/braker1.html) v1.9
1. [BUSCO](https://busco.ezlab.org/) v3.0.2
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### 4.3 Check GeneMark and its dependencies are correctly installed.

```
cd $FUNGAP_DIR/external/gm_et_linux_64/gmes_petap
cd $FUNGAP_DIR/external/gm_et_linux_64/
./gmes_petap.pl
```

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