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choilab authored Jun 17, 2019
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# FunGAP: Fungal Genome Annotation Pipeline v1.0.1

**Last updated: Jan 7, 2019**
**Last updated: June 17, 2019**

**FunGAP is freely available for academic use. For the commerical use or license of FunGAP, please contact In-Geol Choi (igchoi (at) korea.ac.kr). Please, cite the following reference**
**FunGAP is freely available for academic use. For the commerical use or licensing of FunGAP, please contact In-Geol Choi (igchoi (at) korea.ac.kr). Please, cite the following reference**

Reference: Byoungnam Min, Igor V Grigoriev, and In-Geol Choi, **FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation (2017), Bioinformatics**, Volume 33, Issue 18, Pages 2936–2937, https://doi.org/10.1093/bioinformatics/btx353

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FunGAP performs gene prediction on given genome assembly and RNA-seq reads. See **INSTALL.md** and **USAGE.md** for installation and usage instruction, or you can go to wiki tab for the same.
FunGAP performs gene prediction on given genome assembly and RNA-seq reads. See [INSTALL.md](https://github.com/CompSynBioLab-KoreaUniv/FunGAP/blob/master/INSTALL.md) and [USAGE.md](https://github.com/CompSynBioLab-KoreaUniv/FunGAP/blob/master/USAGE.md) for installation and usage instruction, or you can go to [wiki](https://github.com/CompSynBioLab-KoreaUniv/FunGAP/wiki) tab for the same.

* [FunGAP INPUT & OUTPUT](#inputoutput)
* [Pipeline description](#pipedesc)
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