use github actions/codecov; update email

achubaty · Aug 31, 2020 · 5fc0c85 · 5fc0c85
1 parent 293ae49
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -12,3 +12,4 @@
 ^_pkgdown\.yml$
 ^docs$
 ^pkgdown$
+^codecov\.yml$
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -0,0 +1,104 @@
+# NOTE: This workflow is overkill for most R packages
+# check-standard.yaml is likely a better choice
+# usethis::use_github_action("check-standard") will install it.
+#
+# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
+# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+    branches:
+      - master
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: windows-latest, r: '3.6'}
+          - {os: ubuntu-16.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest", http-user-agent: "R/4.0.0 (ubuntu-16.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
+          - {os: ubuntu-16.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+          - {os: ubuntu-16.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+          - {os: ubuntu-16.04,   r: '3.5',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+          - {os: ubuntu-16.04,   r: '3.4',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+          - {os: ubuntu-16.04,   r: '3.3',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
+
+    env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@master
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+
+      - uses: r-lib/actions/setup-pandoc@master
+
+      - name: Query dependencies
+        run: |
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
+        shell: Rscript {0}
+
+      - name: Cache R packages
+        if: runner.os != 'Windows'
+        uses: actions/cache@v1
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
+
+      - name: Install system dependencies
+        if: runner.os == 'Linux'
+        run: |
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "16.04"), sep = "\n")')
+
+      - name: Install dependencies
+        run: |
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("rcmdcheck")
+        shell: Rscript {0}
+
+      - name: Session info
+        run: |
+          options(width = 100)
+          pkgs <- installed.packages()[, "Package"]
+          sessioninfo::session_info(pkgs, include_base = TRUE)
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+        run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@main
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check
diff --git a/.travis.yml b/.travis.yml
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,20 +1,20 @@
 Package: amc
 Type: Package
 Title: Alex's Miscellaneous Code
+Description: A collection of variously useful functions and utilities.
 Version: 0.1.6.9000
-Date: 2020-04-13
+Date: 2020-08-31
 Authors@R: c(
-    person(c("Alex", "M"), "Chubaty", email = "[email protected]",
-    role = c("aut", "cre", "cph")),
+    person(c("Alex", "M"), "Chubaty", email = "[email protected]",
+           role = c("aut", "cre", "cph"), comment = c(ORCID = "0000-0001-7146-8135")),
     person(c("Eliot", "J", "B"), "McIntire", email = "[email protected]",
-    role = c("ctb")),
+           role = c("ctb")),
     person("Ceres", "Barros", email = "[email protected]", role = c("ctb")),
     person("Josh", "O'Brien", role = c("ctb")),
     person("mmfrgmpds", role = c("ctb"))
     )
-Description: A collection of variously useful functions and utilities.
 Depends:
-  R (>= 3.5)
+  R (>= 3.6)
 Imports:
   base64enc,
   data.table,
@@ -27,24 +27,23 @@ Imports:
   parallel,
   plyr,
   reproducible,
-  raster,
+  raster (>= 	3.3-13),
   rgdal,
   sp,
   tools,
   utils
 Suggests:
   covr,
-  hunspell,
   knitr,
   rmarkdown,
   rstudioapi,
   spelling,
   testthat
 BugReports: https://github.com/achubaty/amc/issues
-Language: en-US
+Language: en-CA
 License: GPL-3
 ByteCompile: yes
 Encoding: UTF-8
 LazyData: true
 VignetteBuilder: knitr, rmarkdown
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,10 @@
 Known issues: https://github.com/PredictiveEcology/amc/issues
 
+version 0.1.6.9000
+=============
+
+- drop support for R 3.5 (requirement of several dependencies)
+
 version 0.1.1
 =============
 

diff --git a/README.md b/README.md
@@ -1,8 +1,9 @@
 # `amc`: Alex's miscellaneous code
 
-[![Build status](https://ci.appveyor.com/api/projects/status/y541xpu8dr5icy41/branch/master?svg=true)](https://ci.appveyor.com/project/achubaty/amc/branch/master)
-[![Build Status](https://travis-ci.org/achubaty/amc.svg?branch=master)](https://travis-ci.org/achubaty/amc) 
-[![Coverage Status](https://coveralls.io/repos/github/achubaty/amc/badge.svg?branch=master)](https://coveralls.io/github/achubaty/amc?branch=master)
+<!-- badges: start -->
+[![R build status](https://github.com/achubaty/amc/workflows/R-CMD-check/badge.svg)](https://github.com/achubaty/amc/actions)
+[![Codecov test coverage](https://codecov.io/gh/achubaty/amc/branch/master/graph/badge.svg)](https://codecov.io/gh/achubaty/amc?branch=master)
+<!-- badges: end -->
 
 ## Variously useful functions and utilities
 
@@ -36,4 +37,4 @@ The [`development`](https://github.com/achubaty/amc/tree/development) branch con
 
 To make a contribution to the package, just send a [pull request](https://help.github.com/articles/using-pull-requests/). 
 When you send your PR, make sure `development` is the destination branch on the [amc repository](https://github.com/achubaty/amc).
-Your PR should pass `R CMD check --as-cran`, which will also be checked by <a href="https://travis-ci.org/achubaty/amc">Travis CI</a> and <a href="https://ci.appveyor.com/project/achubaty/amc">AppVeyor CI</a> when the PR is submitted.
+Your PR should pass `R CMD check --as-cran`, which will also be checked by when the PR is submitted.
diff --git a/appveyor.yml b/appveyor.yml
diff --git a/appveyor_cache.txt b/appveyor_cache.txt