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Update README to address locked binding
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Signed-off-by: milevavantuyl <[email protected]>
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milevavantuyl committed Jun 1, 2022
1 parent 9eae520 commit 60cdda8
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2 changes: 2 additions & 0 deletions aif360/aif360-r/README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -116,6 +116,8 @@ load_aif360_lib()
load_aif360_lib()
```

If you get an error: `cannot change value of locked binding`, please restart the R session and run `load_aif360_lib()` exactly once.

``` r
# load a toy dataset
data <- data.frame("feature1" = c(0,0,1,1,1,1,0,1,1,0),
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35 changes: 15 additions & 20 deletions aif360/aif360-r/README.md
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Expand Up @@ -5,7 +5,7 @@

<!-- badges: start -->

[![CRAN\_Status\_Badge](http://www.r-pkg.org/badges/version/aif360)](https://cran.r-project.org/package=aif360)
[![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/aif360)](https://cran.r-project.org/package=aif360)
<!-- badges: end -->

## Overview
Expand All @@ -31,7 +31,7 @@ Or install the development version from GitHub:
devtools::install_github("Trusted-AI/AIF360/aif360/aif360-r")
```

Then, use the install\_aif360() function to install AIF360:
Then, use the install_aif360() function to install AIF360:

``` r
library(aif360)
Expand All @@ -42,7 +42,7 @@ install_aif360()

AIF360 is distributed as a Python package and so needs to be installed
within a Python environment on your system. By default, the
install\_aif360() function attempts to install AIF360 within an isolated
install_aif360() function attempts to install AIF360 within an isolated
Python environment (“r-reticulate”).

You can check using `reticulate::conda_python()` and
Expand All @@ -53,42 +53,36 @@ You can check using `reticulate::conda_python()` and
1) Install reticulate and check if you have miniconda installed. If you
do, go to step 2.

<!-- end list -->

``` r
install.packages("reticulate")
reticulate::conda_list()
```

If you get an error: `Error: Unable to find conda binary. Is Anaconda
installed?`, please install miniconda
If you get an error:
`Error: Unable to find conda binary. Is Anaconda installed?`, please
install miniconda

``` r
reticulate::install_miniconda()
```

If everything worked, you should get the message:

`* Miniconda has been successfully installed at
'/home/rstudio/.local/share/r-miniconda'.`
`* Miniconda has been successfully installed at '/home/rstudio/.local/share/r-miniconda'.`

You can double check:

reticulate::conda_list()

You will get something like this:

```
name python
1 r-miniconda /home/rstudio/.local/share/r-miniconda/bin/python
2 r-reticulate /home/rstudio/.local/share/r-miniconda/envs/r-reticulate/bin/python
```
name python
1 r-miniconda /home/rstudio/.local/share/r-miniconda/bin/python
2 r-reticulate /home/rstudio/.local/share/r-miniconda/envs/r-reticulate/bin/python

2) You can create a new conda env and then configure which version of
Python to use:

<!-- end list -->

``` r
reticulate::conda_create(envname = "r-test")
reticulate::use_miniconda(condaenv = "r-test", required = TRUE)
Expand All @@ -99,8 +93,6 @@ Check that everything is working `reticulate::py_config()`.
3) If you haven’t yet, please install the aif360 package
`install.packages("aif360")` and then install aif360 dependencies

<!-- end list -->

``` r
aif360::install_aif360(envname = "r-test")
```
Expand All @@ -110,7 +102,7 @@ restart.

4) Finally, load the aif360 functions

<!-- end list -->
<!-- -->

library(aif360)
reticulate::use_miniconda(condaenv = "r-test", required = TRUE)
Expand All @@ -122,11 +114,14 @@ restart.
load_aif360_lib()
```

If you get an error: `cannot change value of locked binding`, please
restart the R session and run `load_aif360_lib()` exactly once.

``` r
# load a toy dataset
data <- data.frame("feature1" = c(0,0,1,1,1,1,0,1,1,0),
"feature2" = c(0,1,0,1,1,0,0,0,0,1),
"label" = c(1,0,0,1,0,0,1,0,1,1))
"label" = c(1,0,0,1,0,0,1,0,1,1))

# format the dataset
formatted_dataset <- aif360::aif_dataset(data_path = data,
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