Reproducibility of results/figures from omicverse paper. OmicVerse is the fundamental package for multi omics included bulk ,single cell and spatial RNA-seq analysis with Python. For more information, please read our paper: OmicVerse: A single pipeline for exploring the entire transcriptome universe

A collection of processed data discussed in this manuscript have been deposited on figshare (https://doi.org/10.6084/m9.figshare.23165636) and (https://doi.org/10.6084/m9.figshare.26023324).

A tutorial on the reproduction of the paper is available at https://Starlitnightly.github.io/omicverse-reproducibility/

• Figure_2,sfig2,sfig3,sfig4: dg_ACGAN.ipynb,dg_CGAN.ipynb,dg_bulktrajblend.ipynb,dg_metric_bulktrajblend.ipynb,hpc_ACGAN.ipynb,hpc_CGAN.ipynb,hpc_bulktrajblend.ipynb,hpc_metric_bulktrajblend.ipynb,metric1.ipynb and metric2.ipynb
• Figure_3,sfig5,sfig6,: ov_simulated_interruptions.ipynb
• Figure_4: ov_deg.ipynb and ov_wgcna.ipynb
• Figure_5,sfig7: ov_scrna.ipynb and ov_scrna-epi.ipynb
• Figure_6,sfig8: ov_glue_preprocessed.ipynb and ov_mofa.ipynb

• Zehua Zeng ([email protected], or [email protected])

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