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Tools and methods for analysis of single cell assay data in R

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MAST

Model-based Analysis of Single-cell Transcriptomics

Installation Instructions

 install.packages('devtools')
 library(devtools)
 install_github('MAST', 'RGLab')
 # *or* if you don't have a working latex setup
 install_github('MAST', 'RGLab', build_vignettes=FALSE)
 vignette('MAST-intro')

New Features

  • gseaAfterBoot for competitive geneset analysis under variance inflation
  • Support tests of arbitrary contrasts using LRT/zlm.SingleCellAssay

doi/10.5281/zendoo.9810

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Tools and methods for analysis of single cell assay data in R

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