Remove Numba as a dependency (#2841)

* Remove Numba as a dependency * Continue removing Numba * Remove global substitution for |Numba| * Continue removing Numba * Remove check against py_func * Edit changelog: 2841.internal.rst * nox -s requirements
PlasmaPy · Sep 9, 2024 · 02ac744 · 02ac744
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commit 02ac744
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diff --git a/changelog/2841.internal.rst b/changelog/2841.internal.rst
@@ -0,0 +1 @@
+Removed Numba as a project dependency. Consequently, `~plasmapy.formulary.frequencies.plasma_frequency_lite` and `~plasmapy.formulary.speeds.thermal_speed_lite` are no longer just-in-time compiled by Numba.
diff --git a/ci_requirements/all-3.12-linux.txt b/ci_requirements/all-3.12-linux.txt
@@ -14,9 +14,9 @@ arrow==1.3.0
     # via isoduration
 asteval==1.0.2
     # via lmfit
-astropy==6.1.2
+astropy==6.1.3
     # via plasmapy (pyproject.toml)
-astropy-iers-data==0.2024.8.27.10.28.29
+astropy-iers-data==0.2024.9.2.0.33.23
     # via astropy
 asttokens==2.4.1
     # via stack-data
@@ -35,9 +35,9 @@ beautifulsoup4==4.12.3
     #   sphinx-codeautolink
 bleach==6.1.0
     # via nbconvert
-certifi==2024.7.4
+certifi==2024.8.30
     # via requests
-cffi==1.17.0
+cffi==1.17.1
     # via argon2-cffi-bindings
 cfgv==3.4.0
     # via pre-commit
@@ -78,19 +78,19 @@ docutils==0.20.1
     #   sphinxcontrib-bibtex
 execnet==2.1.1
     # via pytest-xdist
-executing==2.0.1
+executing==2.1.0
     # via stack-data
 fastjsonschema==2.20.0
     # via nbformat
-filelock==3.15.4
+filelock==3.16.0
     # via virtualenv
 fonttools==4.53.1
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
 h5py==3.11.0
     # via plasmapy (pyproject.toml)
-hypothesis==6.111.2
+hypothesis==6.112.0
     # via plasmapy (pyproject.toml)
 identify==2.6.0
     # via pre-commit
@@ -105,7 +105,7 @@ iniconfig==2.0.0
     # via pytest
 ipykernel==6.29.5
     # via plasmapy (pyproject.toml)
-ipython==8.26.0
+ipython==8.27.0
     # via
     #   ipykernel
     #   ipywidgets
@@ -164,12 +164,10 @@ jupyterlab-server==2.27.3
     # via voila
 jupyterlab-widgets==3.0.13
     # via ipywidgets
-kiwisolver==1.4.5
+kiwisolver==1.4.7
     # via matplotlib
 latexcodec==3.0.0
     # via pybtex
-llvmlite==0.43.0
-    # via numba
 lmfit==1.3.2
     # via plasmapy (pyproject.toml)
 markupsafe==2.1.5
@@ -213,17 +211,14 @@ nodeenv==1.9.1
     # via pre-commit
 nox==2024.4.15
     # via plasmapy (pyproject.toml)
-numba==0.60.0
-    # via plasmapy (pyproject.toml)
-numpy==2.0.2
+numpy==2.1.1
     # via
     #   plasmapy (pyproject.toml)
     #   astropy
     #   contourpy
     #   h5py
     #   lmfit
     #   matplotlib
-    #   numba
     #   pandas
     #   pyerfa
     #   scipy
@@ -262,7 +257,7 @@ pillow==10.4.0
     #   plasmapy (pyproject.toml)
     #   matplotlib
     #   sphinx-gallery
-platformdirs==4.2.2
+platformdirs==4.3.2
     # via
     #   jupyter-core
     #   virtualenv
@@ -372,7 +367,7 @@ scipy==1.14.1
     #   lmfit
 send2trash==1.8.3
     # via jupyter-server
-setuptools==74.0.0
+setuptools==74.1.2
     # via plasmapy (pyproject.toml)
 six==1.16.0
     # via
@@ -419,7 +414,7 @@ sphinx-copybutton==0.5.2
     # via plasmapy (pyproject.toml)
 sphinx-gallery==0.17.1
     # via plasmapy (pyproject.toml)
-sphinx-hoverxref==1.4.0
+sphinx-hoverxref==1.4.1
     # via plasmapy (pyproject.toml)
 sphinx-issues==4.1.0
     # via plasmapy (pyproject.toml)
@@ -493,7 +488,7 @@ traitlets==5.14.3
     #   nbformat
     #   nbsphinx
     #   voila
-types-python-dateutil==2.9.0.20240821
+types-python-dateutil==2.9.0.20240906
     # via arrow
 typing-extensions==4.12.2
     # via mypy
@@ -507,7 +502,7 @@ uri-template==1.3.0
     # via jsonschema
 urllib3==2.2.2
     # via requests
-virtualenv==20.26.3
+virtualenv==20.26.4
     # via
     #   nox
     #   pre-commit
@@ -523,7 +518,7 @@ webencodings==0.5.1
     #   tinycss2
 websocket-client==1.8.0
     # via jupyter-server
-websockets==13.0
+websockets==13.0.1
     # via voila
 widgetsnbextension==4.0.13
     # via ipywidgets

diff --git a/ci_requirements/all-3.12-macos.txt b/ci_requirements/all-3.12-macos.txt
@@ -16,9 +16,9 @@ arrow==1.3.0
     # via isoduration
 asteval==1.0.2
     # via lmfit
-astropy==6.1.2
+astropy==6.1.3
     # via plasmapy (pyproject.toml)
-astropy-iers-data==0.2024.8.27.10.28.29
+astropy-iers-data==0.2024.9.2.0.33.23
     # via astropy
 asttokens==2.4.1
     # via stack-data
@@ -37,9 +37,9 @@ beautifulsoup4==4.12.3
     #   sphinx-codeautolink
 bleach==6.1.0
     # via nbconvert
-certifi==2024.7.4
+certifi==2024.8.30
     # via requests
-cffi==1.17.0
+cffi==1.17.1
     # via argon2-cffi-bindings
 cfgv==3.4.0
     # via pre-commit
@@ -80,19 +80,19 @@ docutils==0.20.1
     #   sphinxcontrib-bibtex
 execnet==2.1.1
     # via pytest-xdist
-executing==2.0.1
+executing==2.1.0
     # via stack-data
 fastjsonschema==2.20.0
     # via nbformat
-filelock==3.15.4
+filelock==3.16.0
     # via virtualenv
 fonttools==4.53.1
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
 h5py==3.11.0
     # via plasmapy (pyproject.toml)
-hypothesis==6.111.2
+hypothesis==6.112.0
     # via plasmapy (pyproject.toml)
 identify==2.6.0
     # via pre-commit
@@ -107,7 +107,7 @@ iniconfig==2.0.0
     # via pytest
 ipykernel==6.29.5
     # via plasmapy (pyproject.toml)
-ipython==8.26.0
+ipython==8.27.0
     # via
     #   ipykernel
     #   ipywidgets
@@ -166,12 +166,10 @@ jupyterlab-server==2.27.3
     # via voila
 jupyterlab-widgets==3.0.13
     # via ipywidgets
-kiwisolver==1.4.5
+kiwisolver==1.4.7
     # via matplotlib
 latexcodec==3.0.0
     # via pybtex
-llvmlite==0.43.0
-    # via numba
 lmfit==1.3.2
     # via plasmapy (pyproject.toml)
 markupsafe==2.1.5
@@ -215,17 +213,14 @@ nodeenv==1.9.1
     # via pre-commit
 nox==2024.4.15
     # via plasmapy (pyproject.toml)
-numba==0.60.0
-    # via plasmapy (pyproject.toml)
-numpy==2.0.2
+numpy==2.1.1
     # via
     #   plasmapy (pyproject.toml)
     #   astropy
     #   contourpy
     #   h5py
     #   lmfit
     #   matplotlib
-    #   numba
     #   pandas
     #   pyerfa
     #   scipy
@@ -264,7 +259,7 @@ pillow==10.4.0
     #   plasmapy (pyproject.toml)
     #   matplotlib
     #   sphinx-gallery
-platformdirs==4.2.2
+platformdirs==4.3.2
     # via
     #   jupyter-core
     #   virtualenv
@@ -374,7 +369,7 @@ scipy==1.14.1
     #   lmfit
 send2trash==1.8.3
     # via jupyter-server
-setuptools==74.0.0
+setuptools==74.1.2
     # via plasmapy (pyproject.toml)
 six==1.16.0
     # via
@@ -421,7 +416,7 @@ sphinx-copybutton==0.5.2
     # via plasmapy (pyproject.toml)
 sphinx-gallery==0.17.1
     # via plasmapy (pyproject.toml)
-sphinx-hoverxref==1.4.0
+sphinx-hoverxref==1.4.1
     # via plasmapy (pyproject.toml)
 sphinx-issues==4.1.0
     # via plasmapy (pyproject.toml)
@@ -495,7 +490,7 @@ traitlets==5.14.3
     #   nbformat
     #   nbsphinx
     #   voila
-types-python-dateutil==2.9.0.20240821
+types-python-dateutil==2.9.0.20240906
     # via arrow
 typing-extensions==4.12.2
     # via mypy
@@ -509,7 +504,7 @@ uri-template==1.3.0
     # via jsonschema
 urllib3==2.2.2
     # via requests
-virtualenv==20.26.3
+virtualenv==20.26.4
     # via
     #   nox
     #   pre-commit
@@ -525,7 +520,7 @@ webencodings==0.5.1
     #   tinycss2
 websocket-client==1.8.0
     # via jupyter-server
-websockets==13.0
+websockets==13.0.1
     # via voila
 widgetsnbextension==4.0.13
     # via ipywidgets
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		Removed Numba as a project dependency. Consequently, `~plasmapy.formulary.frequencies.plasma_frequency_lite` and `~plasmapy.formulary.speeds.thermal_speed_lite` are no longer just-in-time compiled by Numba.