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@EliHei2
EliHei2 authored Mar 29, 2022
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The dependency ``torch-geometric`` should be installed separately, corresponding the system specefities, look at `this link <https://pytorch-geometric.readthedocs.io/en/latest/notes/installation.html>`_ for instructions. We recommend to use Miniconda.


GitHub (currently recomended
GitHub (currently recomended)
---------------

First, clone the repository using ``git``::
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============
To see some examples of our pipeline's capability, look at the `notebooks <https://github.com/MarioniLab/sagenet/notebooks>`_ directory. The notebooks are also available on google colab:

#. `Spatial reconstruciton of the developing human heart <https://colab.research.google.com/drive/1x8mXIaUxx9JdolbBIKU_4zqPvM3Wz5Zp?usp=sharing>`_
#. `Spatial reconstruciton of the mouse embryo <https://colab.research.google.com/drive/1H4gVFfxzZgilk6nbUhzFlrFsa1vEHNTl?usp=sharing>`_
#. `Spatial reconstruction of the developing human heart <https://colab.research.google.com/drive/1x8mXIaUxx9JdolbBIKU_4zqPvM3Wz5Zp?usp=sharing>`_
#. `Spatial reconstruction of the mouse embryo <https://colab.research.google.com/drive/1H4gVFfxzZgilk6nbUhzFlrFsa1vEHNTl?usp=sharing>`_

Interactive examples
============
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