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Commits on Apr 29, 2023

• Release minimap2-2.26 (r1175)

  lh3

  committed
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Commits on Apr 25, 2023

• Release minimap2-2.25 (r1173)

  lh3

  committed
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Commits on Apr 21, 2023

• r1171: add operator priority explicit with ()

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  lh3

  committed
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• An option to output SEQ field for secondary alignment (lh3#687)

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  mikolmogorov

  and

  lh3

  authored
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• r1169: improved kexpand compatibility

  lh3

  committed
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Commits on Apr 20, 2023

• r1166: sync kalloc with miniwfa and miniprot

  lh3

  committed
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• make mm_tbuf_t public

  

  iiSeymour

  authored and

  lh3

  committed
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Commits on Apr 8, 2023

• r1164: changed the syntax of -J

  lh3

  committed
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Commits on Apr 7, 2023

• r1163: increased the default -I to 8G

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  lh3

  committed
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• r1162: fixed a typo; also increased splice pen

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  lh3

  committed
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• r1161: merged the simple and complex models

  lh3

  committed
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• r1160: splice model code cleanup

  lh3

  committed
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• Merge branch 'master' into splice-model

  lh3

  committed
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Commits on Mar 17, 2023

• move MM_VERSION define to minimap.h

  

  iiSeymour

  authored and

  lh3

  committed
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Commits on Oct 21, 2022

• r1149: implemented random open syncmer

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  lh3

  committed
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Commits on Oct 6, 2022

• miniprot-like splice model

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  lh3

  committed
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Commits on Nov 24, 2021

• r1117: added --no-hash-name for deterministic

  lh3

  committed
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Commits on Oct 4, 2021

• r1108: fixed missing inversions for lh3#816 and lh3#806

  lh3

  committed
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Commits on Oct 1, 2021

• added --chain-skip-scale

  lh3

  committed
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Commits on Aug 15, 2021

• r1105: avoid long running time occasionally (lh3#771)

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  lh3

  committed
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Commits on Jul 20, 2021

• dev-r1087: added --cap-kalloc

  lh3

  committed
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Commits on Jul 19, 2021

• dev-r1079: per-read error rate

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  lh3

  committed
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Commits on Jul 18, 2021

• dev-r1078: decoupling ranking penalty

  lh3

  committed
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Commits on Jul 17, 2021

• dev-r1076: log gap penalty

  lh3

  committed
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Commits on Jul 16, 2021

• Merge branch 'master' into utec

  lh3

  committed
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Commits on Jul 2, 2021

• Use #defines for CIGAR operators in C code

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  jmarshall

  authored and

  lh3

  committed
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• Use the full MIDNSHP=X string whenever printing CIGAR strings

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  jmarshall

  authored and

  lh3

  committed
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Commits on May 24, 2021

• r1051: added two internal parameters

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  lh3

  committed
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• r1049: removed the long-join heuristics

  lh3

  committed
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• r1048: rescue long gaps

  lh3

  committed
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Commits on May 3, 2021

• support RMQ

  lh3

  committed
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Commits on May 1, 2021

• r1028: backport minigraph -U

  lh3

  committed
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Commits on Apr 30, 2021

• r1025: seed rescuring

  lh3

  committed
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Commits on Aug 21, 2020

• added --mask-len for lh3#659

  lh3

  committed
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Commits on Apr 21, 2020

• r985: optionally report cs/cg on the query strand

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  lh3

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