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Commits on Nov 20, 2024

• Merge branch 'new-motifs' of https://github.com/Genentech/gReLU into new-motifs

  avantikalal

  committed
  7330809

• updated test

  avantikalal

  committed
  7a297a7

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  3cb1165

• updated available motif sets

  avantikalal

  committed
  e0a8dd2

Commits on Nov 6, 2024

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  205d786

• reran tutorials

  avantikalal

  committed
  b52b0bb

Commits on Nov 4, 2024

• Merge branch 'main' into tomtom-tangermeme

  avantikalal

  committed
  3888955

• Merge pull request #69 from Genentech/tangermeme_04

  avantikalal

  authored
  a1c3be4

Commits on Oct 30, 2024

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  7317b33

• use tangermeme read_meme function

  avantikalal

  committed
  6c018e3

Commits on Oct 29, 2024

• Merge pull request #66 from Genentech/preprocess-strand

  avantikalal

  authored
  0115c4e

Commits on Oct 22, 2024

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  8171490

• shifted to tangermeme backend for the tomtom component of modisco

  

  lala8

  committed
  5b01422

Commits on Oct 17, 2024

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  29e495d

• remove empty test

  

  lala8

  committed
  faa85da

• add saliency option in attributions and modisco

  

  lala8

  committed
  cbeff72

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  7cd09a2

• transpose motifs when reading from files

  

  lala8

  committed
  d6e7771

• Merge branch 'tangermeme_04' of https://github.com/Genentech/gReLU into tangermeme_04

  

  lala8

  committed
  aef1b46

• updated MotifScore

  

  lala8

  committed
  1b25d7c

Commits on Oct 16, 2024

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  0061410

• updated scan_sequences to tangermeme, updated test

  

  lala8

  committed
  33adef5

• updated motif input functions to tangermeme and added tests

  

  lala8

  committed
  563ef3b

Commits on Oct 15, 2024

• updated merge_intervals function to account for strand

  

  lala8

  committed
  7424d31

Commits on Sep 9, 2024

• [pre-commit.ci] auto fixes from pre-commit.com hooks

  pre-commit-ci[bot]

  committed
  64b10f4

• merge to github/main

  

  Muhammed Hasan Celik

  committed
  7b05b58

• Revert "Revert "add support for bf16 / fp16 and on device model creation""

  

  Muhammed Hasan Celik

  committed
  3b96856

Commits on Aug 21, 2024

• Merge pull request #15 from Genentech/tangermeme_negatives

  avantikalal

  authored
  1ca2765

Commits on Jul 29, 2024

• allow custom blacklist file

  

  lala8

  committed
  41b4d11

Commits on Jul 24, 2024

• fixed test url

  avantikalal

  committed
  dedfa8c

• fixed test url

  avantikalal

  committed
  096ca2a

Commits on Jul 16, 2024

• fixed test

  avantikalal

  committed
  294a496

Commits on Jul 11, 2024

• fixed bug in marginalize_patterns

  avantikalal

  committed
  6bdceab

• fix tests

  avantikalal

  committed
  3536ced

Commits on Jun 18, 2024

• fixed expected attribution shape in test

  avantikalal

  committed
  28b8f37

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