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Merged
merged 5 commits into from
May 2, 2023
Merged

V1.3 #285

merged 5 commits into from
May 2, 2023

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HadleyKing
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Changes to be committed:
	new file:   data_files/biosampleMeta_ncbi.tsv
[Fixes for Review](#230 (comment))
Changes to be committed:
	modified:   data_files/biosampleMeta_ncbi.tsv
Changes to be committed:
	new file:   data_dictionary/v1.3/README.tsv
	new file:   data_dictionary/v1.3/core_property_list.tsv
	new file:   data_dictionary/v1.3/non-core_property_list.tsv
	new file:   data_dictionary/v1.3/property_definition.tsv
	new file:   data_dictionary/v1.3/release_notes.tsv
	new file:   schema/v1.3/core/.json
	new file:   schema/v1.3/core/assemblyQC.json
	new file:   schema/v1.3/core/assemblyQC_NCBI.json
	new file:   schema/v1.3/core/biosampleMeta.json
	new file:   schema/v1.3/core/ngsQC.json
	new file:   schema/v1.3/core/ngsQC_NCBI.json
	new file:   schema/v1.3/core/siteQC.json
	new file:   schema/v1.3/non-core/.json
	new file:   schema/v1.3/non-core/SRA_biosample.json
	new file:   schema/v1.3/non-core/ngs_ID_list.json
	new file:   schema/v1.3/non-core/sars-cov-2_lineage_mutations.json
	new file:   schema/v1.3/non-core/uniprot-proteome_*.json
Changes to be committed:
	new file:   lib/test_file_generation.sh
	new file:   tests/v1.3/test_files/NC_045512_SARS-CoV-2_Wuhan.fasta
	new file:   tests/v1.3/test_files/UP000001014_99287.fasta
	new file:   tests/v1.3/test_files/UP000001014_99287_DNA.fasta
	new file:   tests/v1.3/test_files/UP000009255_211044.fasta
	new file:   tests/v1.3/test_files/UP000009255_211044_DNA.fasta
	new file:   tests/v1.3/test_files/UP000009255_proteome_genome_metadata.csv
	new file:   tests/v1.3/test_files/UP000180448_33727.fasta
	new file:   tests/v1.3/test_files/UP000180448_33727_DNA.fasta
	new file:   tests/v1.3/test_files/UP000464024_2697049.fasta
	new file:   tests/v1.3/test_files/UP000464024_2697049_DNA.fasta
	new file:   tests/v1.3/test_files/assemblyQC_HIVE.tsv
	new file:   tests/v1.3/test_files/assemblyQC_NCBI.tsv
	new file:   tests/v1.3/test_files/biosampleMeta_HIVE.tsv
	new file:   tests/v1.3/test_files/biosampleMeta_ncbi.tsv
	new file:   tests/v1.3/test_files/core_property_list.tsv
	new file:   tests/v1.3/test_files/ngsQC_HIVE.tsv
	new file:   tests/v1.3/test_files/ngsQC_NCBI.tsv
	new file:   tests/v1.3/test_files/ngsQC_PL.tsv
	new file:   tests/v1.3/test_files/ngs_id_list.tsv
	new file:   tests/v1.3/test_files/non-core_property_list.tsv
	new file:   tests/v1.3/test_files/property_definition.tsv
	new file:   tests/v1.3/test_files/reference-guided_genome_assemblies_Galaxy.fasta
	new file:   tests/v1.3/test_files/reference-guided_genome_assemblies_HIVE-Hexagon.fasta
	new file:   tests/v1.3/test_files/sars-cov-2_lineage_mutations.tsv
	new file:   tests/v1.3/test_files/siteQC_HIVE.tsv
	new file:   tests/v1.3/test_files/temp_archive
	new file:   tests/v1.3/test_files/uniprot-proteome_UP000001014.csv
	new file:   tests/v1.3/test_files/uniprot-proteome_UP000180448.csv
	new file:   tests/v1.3/test_files/uniprot-proteome_UP000464024.csv
	new file:   tests/v1.3/test_results/assemblyQC_HIVE.json
	new file:   tests/v1.3/test_results/assemblyQC_NCBI.json
	new file:   tests/v1.3/test_results/biosampleMeta_HIVE.json
	new file:   tests/v1.3/test_results/biosampleMeta_ncbi.json
	new file:   tests/v1.3/test_results/core_property_list.json
Changes to be committed:
	new file:   data_dictionary/README.md
@HadleyKing HadleyKing merged commit 23b3ac4 into main May 2, 2023
@HadleyKing HadleyKing deleted the v1.3 branch May 2, 2023 14:36
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