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Commits on Aug 15, 2023

• Merge branch 'release-3.4'

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  committed
  9acd8b6

• Typo fix in an ESL_ALLOC in the Altivec/VMX vector code.

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  committed
  a2f4db2

Commits on Aug 13, 2023

• userguide inclusions updated for version 3.4 release

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  committed
  a29c1db

• Release notes added for version 3.4

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  committed
  3801338

• Version, date, copyright info updated for HMMER 3.4 release

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  committed
  60018f7

Commits on Aug 8, 2023

• eslENABLE_{ASAN,TSAN} flags moved from p7_config.h.in to Easel esl_config.h.in

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  7490670

• Fixes some memory leaks in hmmlogo

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  committed
  a63c920

Commits on Aug 7, 2023

• Changes all #include "p7_config.h" to #include <p7_config.h>

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  697bf5a

Commits on Aug 6, 2023

• Fixes gcc -Walloc-size-larger-than warnings from some ESL_ALLOC calls

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  b352c6b

Commits on Aug 3, 2023

• Documents that using Intel compiler requires using -fp-model=strict

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  112be33

Commits on Aug 1, 2023

• configure --enable-tsan wasn't working because of a typo

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  6391170

• Added build-* build directories to .gitignore.

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  d18459e

• Some typo fixes.

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  4215937

Commits on Jul 18, 2023

• Fix p7_tophits_Threshold not resetting domain counts (#307)

  althonos

  authored
  0c4cd88

Commits on Jun 2, 2023

• Fix for #260: hmmsearch segfault with large HMM vs large protein

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  committed
  68f638a

Commits on Jun 1, 2023

• Fixes an asan failure in p7_gmx_utest; adds eslENABLE_{ASAN,TSAN} #define's.

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  committed
  36cd236

• Changes default hmmscan, nhmmscan to serial, not multithreaded.

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  41dcb0e

Commits on May 30, 2023

• Replaces all H3 sprintf() calls with snprintf

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  a705140

• Revisions to recent addition of sanitizer options to configure.ac

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  97bb0e9

Commits on May 25, 2023

• Fixed a memory leak in p7_builder.c that was causing the j/--mxfile and phmmer/--mxfile tests to fail when run under sanitize-address with GCC.

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  committed
  078a70f

• Fixes a memory leak in hmmpgmd2msa.c. Previous code attempted to build/free a p7_tophits object from scratch rather than calling the appropriate Create/Destroy routines and either got it wrong or d…

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  committed
  6aec5d8

• Fixes a memory leak in p7_domain_utest. Memory leak was in the utest itself, not the tested code.

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  committed
  f3ea502

• Fixes memory leaks in p7_hit_utest. Leaks were in the utest itself, not the code being tested

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  committed
  1b0ce84

Commits on May 24, 2023

• Fixed memory problems in the hmmpgmd_ga and hmmpgmd_shard_ga tests. The problem was a debugging printf that didn't get removed and accessed improper memory if a search found fewer than two hits

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  committed
  1198377

• Fixed two memory leaks in hmmd_search_status_utest. They were both only in the utest, not the code it tested

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  committed
  deb650d

• Fixed two memory leaks in hmmd_search_status_utest

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  committed
  5110300

• added --enable-sanitize-address and --enable-sanitize-thread flags to the configure script so that those checkers can be turned on/off easily.

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  committed
  6855fe6

• Merge branch 'develop' of github.com:EddyRivasLab/hmmer into develop

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  committed
  559e26b

• added --enable-sanitize-address and --enable-sanitize-thread flags to the configure script so that those checkers can be turned on/off easily.

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  committed
  6db9c4d

• Fixes a thread data race in nhmmer.

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  e0fc5c4

• A few cosmetic changes while hunting an nhmmer thread race.

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  ff688d1

Commits on May 21, 2023

• Fixes a thread race in hmmscan, in errbuf shared by p7_oprofile_ReadMSV/ReadRest

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  3867dac

Commits on May 20, 2023

• Cosmetic changes

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  a5cf404

Commits on May 1, 2023

• Fixes some compiler warnings specific to M1 Mac (ARM Neon)

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  31adf52

Commits on Apr 30, 2023

• Fixes some MPI-specific compiler warnings

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  committed
  5230762

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