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Commits on Aug 15, 2023

• Merging release-0.49 branch back to master.

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Commits on Aug 13, 2023

• Release notes added for 0.49

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• Version, date, copyright info updated for 0.49 release

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Commits on Aug 12, 2023

• Improves documentation of esl-alipid, to include %match calculation.

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Commits on Aug 8, 2023

• Fixes icc/mpicc warning about underflow from "tiny*tiny* in esl_stats_erfc()

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• Fixes a 5% probability esl_graph_utest failure caused by esl_rnd_Roll(rng, 0)

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• Fixes an overzealous asan leak warning in esl-mask.itest.pl

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• eslENABLE_{ASAN,TSAN} flags moved from p7_config.h.in to Easel esl_config.h.in

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Commits on Aug 7, 2023

• Changes all `#include "esl_config.h"` to `#include <esl_config.h>`

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Commits on Aug 6, 2023

• Documents why we have a ptrdiff_t cast in ESL_ALLOC(p, (ptrdiff_t) sizeof(foo)*n) calls

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Commits on Aug 3, 2023

• Fixes baffling esl_rand64_utest failure, specific to icx -O3 -fp-model=precise

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Commits on Aug 1, 2023

• Adds esl_vec_?Shuffle64() routines to guarantee uniform sampling, including large vectors.

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• Adds --namelen <n> option to esl-reformat for Phylip formats.

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Commits on Jun 8, 2023

• Fixes multithreading issue in esl_stack, not robust to spurious wakeups

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Commits on Jun 5, 2023

• esl_vectorops vector indexing changed from int to int64

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Commits on May 31, 2023

• Fixes a vast number of memory leaks in esl_ssdraw.c There was a memory leak pattern where ps->sclAA[x] was allocated and then quickly overwritten by a call to create_scheme_colorlegend(). In some…

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Commits on May 30, 2023

• Fixes another memory leak in esl_alimanip

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• Fixes a typo in configure.ac

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Commits on May 29, 2023

• Replaces all Easel sprintf() calls with snprintf or esl_sprintf.

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• Revisions to a fix for buffer overrun in esl-alimanip --sindi

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• Revisions to recent addition of sanitizer options to configure.ac

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Commits on May 26, 2023

• Fixes one memory issue in esl-alimanip, one more remaining

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• fixes a memory leak in esl-shuffle

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• fixes a memory leak in esl-compalign

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Commits on May 25, 2023

• Fixes memory leaks in esl-construct

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Commits on May 24, 2023

• Fixes a numbering order in the comments in configure.ac

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• Added a check to the configure scripts that complains and terminates configuration if both the --enable-sanitize-address and --enable-sanitize-thread options are passed, as GCC does not allow the t…

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• This commit does two things, which really should have been separate commits. First, it removes esl_queuelock*, my experiment with rolling our own queueing lock, as tests showed that it was not sig…

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Commits on May 18, 2023

• starting to test queuelock

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Commits on May 17, 2023

• Someday, I'll learn to do "git pull" before I try a push. Today is apparently not that day:

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• moving code over to cluster

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• Fixes thread race condition in esl_threads.

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Commits on May 15, 2023

• Fixes clang compiler warnings in esl-ssdraw.c's use of SSDRAWINFINITY

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Commits on May 1, 2023

• Fixes three occurrences of bad vsyslog() calls in Easel error handling functions.

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Commits on Apr 30, 2023

• Revises the esl_vectorops::stable_sums unit test

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