- git clone
git clone [email protected]:CCRGeneticsBranch/Oncogenomics_v2.git clinomics
- composer install
cd clinomics
mkdir -p bootstrap/cache
composer update
composer install
- change storage permission
mkdir -p storage/logs
mkdir -p storage/framework/views
mkdir -p storage/framework/cache
chmod g+w storage/logs
chmod g+w storage/framework/views
chmod g+w storage/framework/cache
- set site_data link
ln -s /mnt/projects/CCR-JK-oncogenomics/static/site_data/dev/ site_data
cd app
ln -s ../site_data/app/bin .
ln -s ../site_data/app/metadata .
ln -s ../site_data/app/ref .
ln -s ../site_data/app/scripts .
cd ../storage
ln -s ../site_data/storage/bams .
ln -s ../site_data/storage/data_integrity_report .
ln -s ../site_data/storage/ProcessedResults .
ln -s ../site_data/storage/project_data .
ln -s ../site_data/storage/sync .
cd ../public
ln -s ../site_data/app/ref .
cd ..
- edit .env file
APP_NAME=Laravel
APP_ENV=local
APP_KEY=
APP_DEBUG=true
APP_URL=https://fsabcl-onc01d.ncifcrf.gov
LOG_CHANNEL=stack
LOG_DEPRECATIONS_CHANNEL=null
LOG_LEVEL=debug
DB_CONNECTION=oracle
DB_HOST=
DB_PORT=
DB_DATABASE=
DB_USERNAME=
DB_PASSWORD=
IS_PUBLIC_SITE=0
AUTH_REDIRECT=https://fsabcl-onc01d.ncifcrf.gov/clinomicsd/public/login
AUTH_OATH=https://stsstg.nih.gov/auth/oauth/v2/authorize
AUTH_CLIENT_ID=
AUTH_CLIENT_SECRETE=
AUTH_SCOPE=email+profile+openid
AUTH_WEBSITE=https://stsstg.nih.gov
URL=https://fsabcl-onc01t.ncifcrf.gov/clinomicsd/public
URL_PRODUCTION=https://oncogenomics.ccr.cancer.gov/production/public
URL_PUBLIC=https://clinomics.ccr.cancer.gov/clinomics/public/
URL_DEV=https://fsabcl-onc01d.ncifcrf.gov/clinomics_dev/public
R_LIBS=/mnt/nasapps/development/R/r_libs/4.0.2/
R_PATH=/mnt/nasapps/development/R/4.0.2/bin/
LD_LIBRARY_PATH=/mnt/nasapps/development/R/shared_libs/4.0.2
MOUNT=/mnt/projects/CCR-JK-oncogenomics/static/clones/clinomics
MOUNT_PUBLIC=/mnt/projects/CCR-JK-oncogenomics/static/clones/clinomics_public
AVIA=true
TOKEN=
PUBLIC_TOKEN=
BROADCAST_DRIVER=log
CACHE_DRIVER=file
FILESYSTEM_DRIVER=local
QUEUE_CONNECTION=sync
SESSION_DRIVER=cookie
SESSION_LIFETIME=86400
SESSION_SECURE_COOKIE=true
MEMCACHED_HOST=127.0.0.1
REDIS_HOST=127.0.0.1
REDIS_PASSWORD=null
REDIS_PORT=6379
[email protected]
MAIL_MAILER=sendmail
MAIL_HOST=mailfwd.nih.gov
MAIL_PORT=587
MAIL_USERNAME=null
MAIL_PASSWORD=null
MAIL_ENCRYPTION=tls
MAIL_FROM_NAME=Oncogenomics
AWS_ACCESS_KEY_ID=
AWS_SECRET_ACCESS_KEY=
AWS_DEFAULT_REGION=us-east-1
AWS_BUCKET=
AWS_USE_PATH_STYLE_ENDPOINT=false
PUSHER_APP_ID=
PUSHER_APP_KEY=
PUSHER_APP_SECRET=
PUSHER_APP_CLUSTER=mt1
MIX_PUSHER_APP_KEY="${PUSHER_APP_KEY}"
MIX_PUSHER_APP_CLUSTER="${PUSHER_APP_CLUSTER}"