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@CCRGeneticsBranch

CCR Genetics Branch

Genomics, and epigenetic pipelines developed by the OncoGenomics Section of the Genetics Branch, CCR.

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  1. khanlab_pipeline khanlab_pipeline Public

    Forked from hsienchao/khanlab_pipeline

    Bioinformatics pipeline

    Python 2

  2. ervTelescope ervTelescope Public

    Shell 1

  3. ngs_pipeline-v3.2.2 ngs_pipeline-v3.2.2 Public

    Python

  4. RNAseqLandscape RNAseqLandscape Public

    R code for paper "Immuno-Transcriptomic Profiling of Extracranial Pediatric Solid Malignancies"

    R 1

  5. CITEseq_Screening_CARs CITEseq_Screening_CARs Public

    Forked from MeijieTian/CITEseq_Screening_CARs

    using CITEseq to screen optimal CARs

    R

  6. fusionTools fusionTools Public

    Python scripts processing fusion breakpoints and visualize them with D3.js

    Perl

Repositories

Showing 10 of 21 repositories
  • Oncogenomics_v2 Public

    Oncogenomics portal version 2

    CCRGeneticsBranch/Oncogenomics_v2’s past year of commit activity
    JavaScript 0 0 37 0 Updated Dec 3, 2024
  • CARLISLE Public Forked from CCBR/CARLISLE

    Cut And Run Analysis Pipeline

    CCRGeneticsBranch/CARLISLE’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Oct 31, 2024
  • Oncogenomics_NF_WF Public
    CCRGeneticsBranch/Oncogenomics_NF_WF’s past year of commit activity
    Nextflow 0 1 2 0 Updated Oct 16, 2024
  • khanlab_pipeline Public Forked from hsienchao/khanlab_pipeline

    Bioinformatics pipeline

    CCRGeneticsBranch/khanlab_pipeline’s past year of commit activity
    Python 2 2 0 0 Updated Jun 10, 2024
  • MeltzerLab_Nextflow_pipeline Public

    MeltzerLab data processing Nextflow pipeline

    CCRGeneticsBranch/MeltzerLab_Nextflow_pipeline’s past year of commit activity
    Nextflow 0 MIT 0 5 0 Updated May 12, 2024
  • fusionTools Public

    Python scripts processing fusion breakpoints and visualize them with D3.js

    CCRGeneticsBranch/fusionTools’s past year of commit activity
    Perl 0 0 0 0 Updated Apr 12, 2024
  • ervTelescope Public
    CCRGeneticsBranch/ervTelescope’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Oct 25, 2023
  • scRNAseq_snakemake_pipeline Public
    CCRGeneticsBranch/scRNAseq_snakemake_pipeline’s past year of commit activity
    R 0 0 0 0 Updated Oct 2, 2023
  • Oncogenomics_docker Public

    The docker for Oncogenomics portal

    CCRGeneticsBranch/Oncogenomics_docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Sep 21, 2023
  • Dockers Public
    CCRGeneticsBranch/Dockers’s past year of commit activity
    Roff 0 0 0 0 Updated Aug 4, 2023
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