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38 Open 92 Closed
38 Open 92 Closed
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Issues list

how to call biallele using vardict in cancer
#192 opened Oct 16, 2024 by zsanli
Amplicon variant calling - empty file
#191 opened Oct 9, 2024 by SheepwormJM
Discrepant MAPQ and NM values in BAM and Vardict output
#190 opened Feb 23, 2024 by jkunisak
TYPE=Complex
#189 opened Jan 19, 2024 by lmanchon
local realignment file
#188 opened Oct 23, 2023 by j-knome
Output realignment for inspection
#187 opened Sep 12, 2023 by bwubb
How is GT determined in vardict?
#186 opened Aug 30, 2023 by arolni
How does vaf cutoff influence the result?
#185 opened May 28, 2023 by EvaPang2022
JAVA ERROR RUNNING VARDICTJAVA
#184 opened Apr 3, 2023 by espelpz
vardict -3 parameter : get a new confused variant
#183 opened Mar 23, 2023 by jiangldu
1
large indel
#182 opened Mar 8, 2023 by lmanchon
VAF ~ 1%
#181 opened Mar 2, 2023 by lmanchon
7
single mode vs paired mode
#178 opened Oct 25, 2022 by melodysyue
Low VAF variant missing in a region with a set of mismatches (moved to java version issue)
#176 opened Jun 9, 2022 by gaosong0329
1
Vardict adding 1 additional count to VD "Variant Depth"
#174 opened May 3, 2022 by BJWiley233
Can we set Vardict VAF below 0.01?
#173 opened Apr 11, 2022 by hanaecarrie
2
Apostrophe char in bed "name" field produces incorrect output from teststrandbias.R
#172 opened Mar 22, 2022 by grafitos
High Disk Usage
#169 opened Nov 3, 2021 by THZ34
How to calculate AF？
#168 opened Oct 12, 2021 by EthanW1003
question about QUAL INFO
#166 opened Sep 30, 2021 by kkamii
2
GT vardict info
#165 opened Sep 24, 2021 by asmlgkj
4
Depth is larger than AltDepth, strange variant
#160 opened Jun 8, 2021 by worker000000
Structural Variants
#157 opened Mar 17, 2021 by GorgonVZ
How to interpret VarDict output in vcf format
#156 opened Mar 3, 2021 by Nairobi-2020
1
question about high quality variant
#154 opened Dec 11, 2020 by kkamiii
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