A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

Meta-analysis of genomewide association scans

FOCUS: Fine-mapping Of CaUsal gene Sets

Causal Mixture Model for GWAS summary statistics

Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche-psb/wgd.

GWAS Tutorial for Beginners

Statistical fine-mapping pipeline in FinnGen

A GWAS fine-mapping pipeline used in CAUSALdb

Visualization of Colocalization Between eQTL and GWAS Data

Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue

Matrix eQTL: Ultra fast eQTL analysis via large matrix operations

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.

📊 Circular and Rectangular Manhattan Plot

Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF

A flexible R package for weighted principal component case control matching

Development for SAIGE and SAIGE-GENE(+)

A library for generating and evaluating synthetic tabular data for privacy, fairness and data augmentation.

Python Basics ( v3.x )

Tutorial in Python targeted at Epidemiologists. Will discuss the basics of analysis in Python 3

PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files

The PheWAS R package

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

A comprehensive tutorial about GWAS and PRS