A complete pipeline for metagenomic analysis
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Nov 15, 2024 - C
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taxonomic-assignment
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Phylogenetic intersection analysis (PIA) from the Allaby lab, University of Warwick: doi.org/10.3389/fevo.2020.00084
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May 14, 2021 - Perl
This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
euler
heatmap
pca
limnology
microbiome
bacteria
ecology
computer-cluster
principle-component-analysis
phyloseq
taxonomic-classification
amplicon-sequencing
qiime2
taxonomic-assignment
paleolimnology
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Feb 12, 2024 - CSS
Additional tools for manipulating PIA output.
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Mar 10, 2021 - Perl
Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake
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Jun 5, 2019 - Jupyter Notebook
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