Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
A DSL for data-driven computational pipelines
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
Workflow Description Language - Specification and Implementations
rrtools: Tools for Writing Reproducible Research in R
A workflow for reproducible and open scientific articles
Create powerful Hydra applications without the yaml files and boilerplate code.
A curated list of reproducible research case studies, projects, tutorials, and media
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Package an R workspace and all dependencies as a Docker container
Papers with code for single cell related papers
Future Gadget Laboratory
High performance spatial analysis in a web browser and across programming languages and hardware architectures
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
🐳 Containerize R Markdown documents for continuous reproducibility
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Everware is about re-useable science, it allows people to jump right in to your research code.
Data Analysis Workflows & Reproducibility Learning Resources
SEER, reimplemented in python 🐍🔮
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