Ultrafast Sample Placement on Existing Trees
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Updated
Nov 22, 2024 - C++
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phylogenetic-placement
Here are 10 public repositories matching this topic...
A toolkit for analyzing and visualizing phylogenetic (placement) data
c-plus-plus
phylogenetics
genesis
evolutionary-placement
phylogenetic-data
placement
phylogenetic-placement
gappa
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Updated
Jun 28, 2024 - C++
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
workflow
benchmarking
snakemake
metagenomics
metabarcoding
placement
taxonomic-classification
phylogenetic-placement
phylo-kmers
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May 15, 2024 - Python
An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing
hmm
phylogenetics
mixture-model
dirichlet-process-mixtures
taxonomy-assignment
otu
phylogenetic-placement
jplace
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Updated
Apr 8, 2024 - C++
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
metagenomics
phylogenetics
metabarcoding
placement
taxonomic-classification
phylogenetic-placement
kmers
phylo-kmers
genetic-markers
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Dec 20, 2023 - Java
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
workflow
pipeline
nextflow
evolution
phylogenetics
sequence-classification
taxonomy-assignment
phylogenetic-placement
nf-core
evolutionary-tree
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Oct 11, 2024 - Groovy
Pipeline for building topologically-constrained phylogenies from DNA barcode data
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Updated
Nov 19, 2024 - Python
Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"
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Jun 9, 2023 - R
Tool for estimating the difficulty of phylogenetic placements
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Updated
Jan 9, 2024 - Python
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