Antimicrobial Peptide web Database built with Django. Decreasing research costs to new antibiotics.

Second program for a class in molecular modelling (done in june 2016). It carries out a Monte Carlo simulation with simulated annealing for HP protein model.

Basic tool for amino acid / protein translation, yet it accepts both RNA and DNA as input and can predict their entire possible sequence. More refinement will be done soon, such as incorporating it all into classes, the reverse list prediction, stop and start codons.

Fast proteasomal cleavage detection. Apache-licensed.

Repository for Inbix-2017 - [Ideation coding challenge]

quick interface for side peptide side product calculator

Toolkit for bioinformatic calculations with peptides on Apache Spark

Running big data on GPUs: Identification of proteins in DNA

PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data

Analyze possible peptide fragments with peptide serum stability studies.

Dataset of 86.000 peptides and their binding degree, that can be used to predict, whether a peptide is binded or not.

A set of different models, that predict the degree of binding of peptide proteins.

netMHC Apache Spark CLI

Reproduce bioinformatics analysis for the paper Meyer, K. et al., Cell, 2018.

Map the peptides to its corresponding protein sequence and locate the modification sites

Converter from DTASelect to pepXML formats

BIO-IT -- Biochemical Insights Of Important Topics

DIAServer is an open-source platform-independent browser-based interface for building personalized assay libraries for targeted analysis of SWATH/DIA-MS data.

Prediction of the atomic composition based on a single accurate mass -- Python