The codebase of the OpenMS project

pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant

Proteomics label-free quantification (LFQ) analysis pipeline

Identify and quantify MHC eluted peptides from mass spectrometry raw data

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

Automated quantitative analysis of DIA proteomics mass spectrometry measurements.

Python module for lipidomics LC MS/MS data analysis

🐍 Open-Source Software for the semi-automated analysis of glycopeptide mass spectrometry data

Convert between common MS data formats.

A cloud-based system to support proteomics laboratories in daily quality assessment using a user-friendly interface, easy setup, automated data processing and archiving, and unbiased instrument evaluation.

Select specified scans and precursors from a mzML file

A simple HTML interface for converting RAW format to MzML, MzXML, and MGF files.