CLI tool for flexible and fast adaptive sampling on ONT sequencers

Assembly and intrahost/low-frequency variant calling for viral samples

ClairS - a deep-learning method for long-read somatic small variant calling

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Exploit Huawei ONT device, only support r019. You need to compile kernel module getshell.ko for r018 or r017 by yourself.

Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.

start shell scripts on hs8145x6 with full root privilege

Clair3-RNA - a long-read small variant caller for RNA sequencing data

MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data

Subset of fast5 files contained in a fastq, BAM, or SAM file.

FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.

Wrapper to read fast5, slow5, blow5 and pod5 files.

GUI for inspecting POD5 files

Benchmarking for long-reads assembler

Magnipore: Differential single nucleotide changes of ONT signals

SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)

Get L. pneumophila ST from long-read or hybrid assemblies.

CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.

Unofficial client library to get data from Huawei router

Parses and exports GPON Stats from ONT through Rest API (JSON format)