A customizable pipeline for data extraction from MIMIC-IV.

Toolkit for evaluating and monitoring AI models in clinical settings

🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

OMOP standardization pipeline for ICU databases

Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)

A toolkit for developing foundation models using Electronic Health Record (EHR) data.

[arXiv'24] The official implementation code of LEADER.

Data Science & Machine Learning Project applied to Healthcare

Predicting length of stay in hospitals intensive care unit using MIMIC IV

mimic4fhir converts data from MIMIC IV database (PostgreSQL) to HL7 FHIR R4 resources or the German Medical Informatics Initiative core data sets.

For local installation of MIMIC IV on a Windows machine, on Postgresql 13 and using PGAdmin

A CLI tool for extracting event logs out of MIMIC Databases.

Descriptive & prescriptive analysis of the effects of Vasoconstrictive medication via MIMIC's database using Targeted Maximum Likelihood Estimation for Causal Inference & ML techniques

MIMICAI - Exploring MIMIC Data Using LLM and Open-WebUI

Patient Discharge Classification based on the Hospital Treatment Process (ICPM 2021)

Embeddings generation from MIMIC-IV and MIMIC-CXR

Official repo for "Characterizing Stigmatizing Language in Medical Records" (ACL 2023)

Research Methodology Project

SG Healthcare AI Datathon 2021 - acute kidney injury (AKI) patients requiring replacement renal therapy

Team Cyan's function toolbox for exploring databases