Rapid comparison and dereplication of genomes
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Nov 15, 2024 - Python
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microbial-genomes
Here are 6 public repositories matching this topic...
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
alignment
sequence-search
microbial-genomes
sequence-alignment
bacterial-database
bacterial-genomes
large-scale-dataset
prokaryotic-genomes
lexichash
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Nov 19, 2024 - Go
Micro 612 genomics workshop
visualization
workshop
genomics
ngs
comparative-genomics
microbial-genomes
microbial-bioinformatics-workshop
bioinformatics-tutorials
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Apr 23, 2021 - Shell
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
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Feb 22, 2023 - JavaScript
R package and vignette to denoise metagenomic cell-free DNA sequencing data.
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Nov 5, 2019 - Roff
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
bioinformatics
genomics
bioinformatics-pipeline
microbiology
microbial-genomes
tuberculosis
genomic-data-analysis
genomics-visualization
mycobacterium-bovis
mycobacterium-tuberculosis-complex
bacterial
bacterial-genomes
mycobacterium-tuberculosis
genomic-data-science
bacterial-genome-analysis
mycobacterium-orygis
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Apr 26, 2022 - R
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