Multidimensional data analysis

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

OLS website: web presence and knowledge management for we-are-ols.org

Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

Top open source software from the top 50 pharmaceutical companies

Awesome list of the data and AI/ML related projects with direct Life Science Companies participation

Bioconductor data science introduction

Code repository for the book "Python for the Life Sciences" by Lancaster & Webster

A user interface for the hyperspy package. https://hyperspy.org/hyperspyUI

This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale analysis and perform interactive queries against a data lake. The solution also demonstrates the use of Amazon Omics for multi-modal analysis.

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

Documentation and tutorials on using GCP for biomedical research

Introduction to the Bioconductor project

R package to run Bayesian MMRMs using {brms}

A collection of functional and scientific icons for EMBL-EBI sites.

Workshop on Deep Learning for Health and Life Sciences

Documentation and tutorials on using AWS for biomedical research

R/Pharma 2023 workshop example code: leveraging {targets} and {crew} to simulate clinical trials