Tools for computational pathology

Official MATLAB implementation of the "Sparse deconvolution" -v1.0.3

Official Python implementation of the 'Sparse deconvolution'-v0.3.0

Self-Supervised Vision Transformers for multiplexed imaging datasets

Precision current source, with optional optical feedback, for driving LEDs and laser diodes

Pretraining a foundation model for generalizable fluorescence microscopy-based image restoration

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

Point Spread Function calculations for fluorescence microscopy

A convex 3D deconvolution algorithm for low photon count fluorescence imaging

Neuroclear is a deep-learning-based Python module to train a deep neural network for the task of applying super-resolution to degraded axial resolution in fluorescence microscopy, using a single image stack.

Single-cell fluorescence microscopy data analysis

An open-source Python library for the analysis of fluorescence lifetime and hyperspectral images using the phasor approach.

File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy (Sample data: https://gitlab.peulen.xyz/skf/tttr-data)

GLabViz - Interactive Analysis and Visualization Application for Scientific Data written in Python using Qt and pyqtrgaph

PyFRAP: A Python based FRAP analysis tool box

Real-time, interactive exploration of 3D image stacks

RNA smFISH oligos/probes design tool

Read Olympus image files (OIF and OIB)

DDRS4PALS - A software for the acquisition and simulation of positron lifetime spectra (PALS) using the DRS4 evaluation board.

Pair correlation function analysis of fluorescence fluctuations in big image time series