Research software for (semi-) automated detection and identification of neurons in images of NeuroPAL, extract ID’d neural activity traces from NeuroPAL;GCaMP animals, and upload these datasets to public repositories. DOI: 10.1016/j.cell.2020.12.012
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
Detect and analyze Network Motifs of any network, with Python.
Ontology for phenotypes pertaining to the nematode Caenorhabditis elegans and related nematodes used by the nematode genome database WormBase
Bioinformatic analysis of gene expression microarray profiles and DGEs on R and R studio
Newtonian mechanics model for C. elegans locomotion
WormPose: Image synthesis and convolutional networks for pose estimation in C. elegans
WormRuler: A video analysis software to analyze body length of Caenorhabditis elegans
RAPToR (Real Age Prediction from Transcriptome staging on Reference) is a tool to accurately predict individual samples' developmental age from their gene expression profiles.
Web-based Interfaces for Virtual C. elegans Neuron Model Definition, Network Configuration, Behavioural Experiment Definition and Experiment Results Visualisation
This is a simulation for creating a worm that find it's food using two neurons.
An Expressive ORM for NodeJS.
Tracking C. Elegans in a 3D environment (Computer vision)
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