A course on genomics and bioinformatics from WU

Differential accessibility calculation for bulk-ATAC seq.

This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.

Snakemake pipeline to run ATAC-seq preprocessing. Still not working

This pipeline has been superceeded. Please use >>>

This repository consists of two **Jupyter Notebooks** created to document a comparison of a mouse brain snATAC-seq (single nuclei assay for transposase accessible chromatin with sequencing) data set from http://catlas.org/mousebrain/ with a scRNA-seq (single cell RNA sequencing) data set from the Linnarsson lab's http://mousebrain.org/. Specific…

Code accompanying the paper titled "Cholinergic control of Th17 cell pathogenicity in experimental autoimmune encephalomyelitis"

This is a repository to show my experience analyzing different kinds of Omics data.

ATAC-seq lab for BIOINF545