Skip to content

Pull requests: snakemake/snakemake

New pull request New
90 Open 1,578 Closed
90 Open 1,578 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

chore: add test case for ensuring that remote output files are still properly uploaded to storage in case of failing jobs within the group
#3549 opened Apr 25, 2025 by johanneskoester Loading…
2 tasks done
1
fix: Refactor of format_job_exec related to issue 2981, 3221
#3521 opened Apr 8, 2025 by tbooth Loading…
6
fix: parsing ordinary yaml strings
#3506 opened Apr 2, 2025 by cmeesters Loading…
1 task
24
fix: initialize log queue with global logger
#3505 opened Apr 2, 2025 by cademirch • Draft
2 tasks
1
fix: don't print "Building DAG" for DOT output
#3498 opened Apr 1, 2025 by ASLeonard Loading…
2 tasks done
4
WIP fix: cannot unpack non-iterable NoneType object from #3365
#3496 opened Mar 31, 2025 by Hocnonsense Loading…
1 of 2 tasks
3
fix: Restore python rules changes triggering reruns. (GH: #3213)
#3485 opened Mar 26, 2025 by royjacobson Loading…
2 tasks done
1
8
feat: add landing page to the report containing custom metadata defined with a YTE yaml template enhancement New feature or request hackathon-2025
#3452 opened Mar 16, 2025 by LKress • Draft
2 tasks done
@johanneskoester
18
feat: persist the names of the parameters enhancement New feature or request hackathon-2025
#3440 opened Mar 14, 2025 by DrYak Loading…
2 tasks done
7
fix: Add a check for nodelocal when selecting which files to store
#3439 opened Mar 14, 2025 by tadasbar Loading…
2 tasks done
@tadasbar
4
fix: display group jobs on dryrun
#3435 opened Mar 14, 2025 by johanneskoester Loading…
2 tasks done
1
@johanneskoester @tadasbar
2
fix: enable default default prefix for source archive upload
#3432 opened Mar 14, 2025 by jakevc • Draft
2 tasks
1
4
feat: initial save write cli command/profile and config info
#3427 opened Mar 14, 2025 by cademirch Loading…
1 of 2 tasks
15
feat: Allow for dict queries in storage objects
#3425 opened Mar 14, 2025 by MattMonk Loading…
2 tasks done
@MattMonk
1
fix: standardize handling of resources bug Something isn't working
#3421 opened Mar 13, 2025 by pvandyken Loading…
2 tasks done
@pvandyken
13
fix: DeprecationWarning when using snakemake.utils.validate
#3420 opened Mar 13, 2025 by WardDeb Loading…
2 tasks done
1
4
feat(docker): optimize Dockerfile for caching, security, and efficiency
#3402 opened Mar 12, 2025 by Alputer Loading…
1 of 2 tasks
@Alputer
11
fix: Print shell cmds when using wrappers
#3397 opened Mar 12, 2025 by schrins Loading…
1 of 2 tasks
14
fix: group resources
#3367 opened Mar 11, 2025 by fgvieira Loading…
2 tasks done
@pvandyken
3
feat: generic software deployment plugin support
#3339 opened Mar 6, 2025 by johanneskoester • Draft
2 tasks
14
feat: make conda/apptainer/network tests skippable via env vars
#3312 opened Feb 26, 2025 by mschubert Loading…
2 tasks done
14
feat: add cli option to provide source file manifest to specify workflow source files
#3300 opened Feb 17, 2025 by kriemo Loading…
2 tasks
6
feat: New CLI argument --premable-only, acting as a flexible side-kick to --draft-notebook
#3281 opened Feb 2, 2025 by moritzschaefer Loading…
2 of 3 tasks
1
3
fix: fix incomplete help text of --cache argument.
#3279 opened Jan 31, 2025 by johanneskoester Loading…
2 tasks done
2
fix: Encoded filenames too long for Windows
#3275 opened Jan 28, 2025 by euronion Loading…
1 of 2 tasks
1
3
ProTip! What’s not been updated in a month: updated:<2025-04-03.